Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC9.44□□□□□ -0.9
USH2AO75445 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC9.44□□□□□ -0.9
USH2AO75445 H19-210ENST00000439725 1929 ntTSL 2 BASIC9.44□□□□□ -0.9
USH2AO75445 DUSP8P4-201ENST00000399538 1761 ntBASIC9.44□□□□□ -0.9
USH2AO75445 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
USH2AO75445 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
USH2AO75445 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
USH2AO75445 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
USH2AO75445 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
USH2AO75445 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC9.43□□□□□ -0.9
USH2AO75445 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
USH2AO75445 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC9.43□□□□□ -0.9
USH2AO75445 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC9.43□□□□□ -0.9
USH2AO75445 CRK-204ENST00000574295 1391 ntTSL 5 BASIC9.43□□□□□ -0.9
USH2AO75445 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
USH2AO75445 KRT18P22-201ENST00000402024 1347 ntBASIC9.43□□□□□ -0.9
USH2AO75445 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
USH2AO75445 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC9.43□□□□□ -0.9
USH2AO75445 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
USH2AO75445 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC9.43□□□□□ -0.9
USH2AO75445 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
USH2AO75445 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC9.43□□□□□ -0.9
USH2AO75445 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
USH2AO75445 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
USH2AO75445 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
USH2AO75445 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC9.43□□□□□ -0.9
USH2AO75445 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
USH2AO75445 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC9.43□□□□□ -0.9
USH2AO75445 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
USH2AO75445 LINC01568-207ENST00000641790 1380 ntBASIC9.43□□□□□ -0.9
USH2AO75445 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
USH2AO75445 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
USH2AO75445 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC9.43□□□□□ -0.9
USH2AO75445 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC9.43□□□□□ -0.9
USH2AO75445 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
USH2AO75445 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
USH2AO75445 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC9.43□□□□□ -0.9
USH2AO75445 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC9.43□□□□□ -0.9
USH2AO75445 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
USH2AO75445 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC9.42□□□□□ -0.9
USH2AO75445 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC9.42□□□□□ -0.9
USH2AO75445 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC9.42□□□□□ -0.9
USH2AO75445 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
USH2AO75445 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC9.42□□□□□ -0.9
USH2AO75445 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
USH2AO75445 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC9.42□□□□□ -0.9
USH2AO75445 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
USH2AO75445 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC9.42□□□□□ -0.9
USH2AO75445 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC9.42□□□□□ -0.9
USH2AO75445 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC9.42□□□□□ -0.9
USH2AO75445 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC9.42□□□□□ -0.9
USH2AO75445 AC079598.2-202ENST00000546624 1451 ntBASIC9.42□□□□□ -0.9
USH2AO75445 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC9.42□□□□□ -0.9
USH2AO75445 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC9.42□□□□□ -0.9
USH2AO75445 AC004263.2-201ENST00000617183 678 ntBASIC9.42□□□□□ -0.9
USH2AO75445 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC9.42□□□□□ -0.9
USH2AO75445 GLDC-219ENST00000640208 420 ntTSL 2 BASIC9.42□□□□□ -0.9
USH2AO75445 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC9.42□□□□□ -0.9
USH2AO75445 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC9.42□□□□□ -0.9
USH2AO75445 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
USH2AO75445 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC9.42□□□□□ -0.9
USH2AO75445 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC9.42□□□□□ -0.9
USH2AO75445 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
USH2AO75445 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC9.42□□□□□ -0.9
USH2AO75445 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
USH2AO75445 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC9.42□□□□□ -0.9
USH2AO75445 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC9.42□□□□□ -0.9
USH2AO75445 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC9.42□□□□□ -0.9
USH2AO75445 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
USH2AO75445 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
USH2AO75445 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
USH2AO75445 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC9.42□□□□□ -0.9
USH2AO75445 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
USH2AO75445 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
USH2AO75445 IPPK-202ENST00000375522 882 ntTSL 3 BASIC9.42□□□□□ -0.9
USH2AO75445 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC9.42□□□□□ -0.9
USH2AO75445 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC9.42□□□□□ -0.9
USH2AO75445 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC9.42□□□□□ -0.9
USH2AO75445 AP004607.7-201ENST00000527152 1677 ntBASIC9.42□□□□□ -0.9
USH2AO75445 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC9.42□□□□□ -0.9
USH2AO75445 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
USH2AO75445 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC9.41□□□□□ -0.9
USH2AO75445 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC9.41□□□□□ -0.9
USH2AO75445 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC9.41□□□□□ -0.9
USH2AO75445 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC9.41□□□□□ -0.9
USH2AO75445 AC145676.1-201ENST00000514988 2004 ntBASIC9.41□□□□□ -0.9
USH2AO75445 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC9.41□□□□□ -0.9
USH2AO75445 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC9.41□□□□□ -0.9
USH2AO75445 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC9.41□□□□□ -0.9
USH2AO75445 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC9.41□□□□□ -0.9
USH2AO75445 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC9.41□□□□□ -0.9
USH2AO75445 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC9.41□□□□□ -0.9
USH2AO75445 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
USH2AO75445 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC9.41□□□□□ -0.9
USH2AO75445 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC9.41□□□□□ -0.9
USH2AO75445 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC9.41□□□□□ -0.9
USH2AO75445 WWOX-216ENST00000569818 525 ntBASIC9.41□□□□□ -0.9
USH2AO75445 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC9.41□□□□□ -0.9
USH2AO75445 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC9.41□□□□□ -0.9
USH2AO75445 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC9.41□□□□□ -0.9
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms