Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SNX3O60493 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
SNX3O60493 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SNX3O60493 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
SNX3O60493 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
SNX3O60493 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.57■□□□□ 0.88
SNX3O60493 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SNX3O60493 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SNX3O60493 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SNX3O60493 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SNX3O60493 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SNX3O60493 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.56■□□□□ 0.88
SNX3O60493 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SNX3O60493 AL034346.1-201ENST00000568244 1277 ntBASIC20.56■□□□□ 0.88
SNX3O60493 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SNX3O60493 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
SNX3O60493 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.56■□□□□ 0.88
SNX3O60493 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.56■□□□□ 0.88
SNX3O60493 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.56■□□□□ 0.88
SNX3O60493 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.55■□□□□ 0.88
SNX3O60493 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SNX3O60493 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SNX3O60493 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.55■□□□□ 0.88
SNX3O60493 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SNX3O60493 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SNX3O60493 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SNX3O60493 RARRES2P2-201ENST00000394842 485 ntBASIC20.55■□□□□ 0.88
SNX3O60493 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.55■□□□□ 0.88
SNX3O60493 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SNX3O60493 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SNX3O60493 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SNX3O60493 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SNX3O60493 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.54■□□□□ 0.88
SNX3O60493 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SNX3O60493 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
SNX3O60493 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SNX3O60493 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SNX3O60493 AC010980.1-201ENST00000587192 1142 ntBASIC20.54■□□□□ 0.88
SNX3O60493 AC068587.7-201ENST00000641602 218 ntBASIC20.54■□□□□ 0.88
SNX3O60493 AP000974.1-201ENST00000623909 2387 ntBASIC20.54■□□□□ 0.88
SNX3O60493 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SNX3O60493 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SNX3O60493 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
SNX3O60493 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SNX3O60493 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SNX3O60493 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SNX3O60493 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SNX3O60493 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.53■□□□□ 0.88
SNX3O60493 MIR4508-201ENST00000584178 70 ntBASIC20.53■□□□□ 0.88
SNX3O60493 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
SNX3O60493 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SNX3O60493 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SNX3O60493 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.53■□□□□ 0.88
SNX3O60493 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
SNX3O60493 TCF3P1-201ENST00000423021 1937 ntBASIC20.53■□□□□ 0.88
SNX3O60493 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.53■□□□□ 0.88
SNX3O60493 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SNX3O60493 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
SNX3O60493 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.52■□□□□ 0.88
SNX3O60493 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
SNX3O60493 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
SNX3O60493 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SNX3O60493 AL451085.2-201ENST00000605085 799 ntBASIC20.52■□□□□ 0.88
SNX3O60493 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC20.52■□□□□ 0.88
SNX3O60493 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SNX3O60493 TNXA-203ENST00000507684 2038 ntBASIC20.52■□□□□ 0.88
SNX3O60493 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
SNX3O60493 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SNX3O60493 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC20.52■□□□□ 0.88
SNX3O60493 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
SNX3O60493 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC20.52■□□□□ 0.87
SNX3O60493 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SNX3O60493 FP700111.2-201ENST00000619190 1892 ntBASIC20.52■□□□□ 0.87
SNX3O60493 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
SNX3O60493 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SNX3O60493 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC20.51■□□□□ 0.87
SNX3O60493 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
SNX3O60493 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SNX3O60493 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SNX3O60493 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SNX3O60493 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SNX3O60493 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SNX3O60493 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SNX3O60493 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SNX3O60493 Z92544.1-202ENST00000571933 1220 ntBASIC20.51■□□□□ 0.87
SNX3O60493 AC133637.1-201ENST00000624115 1537 ntBASIC20.51■□□□□ 0.87
SNX3O60493 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SNX3O60493 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SNX3O60493 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.51■□□□□ 0.87
SNX3O60493 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SNX3O60493 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
SNX3O60493 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.51■□□□□ 0.87
SNX3O60493 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.51■□□□□ 0.87
SNX3O60493 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SNX3O60493 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
SNX3O60493 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.5■□□□□ 0.87
SNX3O60493 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.5■□□□□ 0.87
SNX3O60493 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SNX3O60493 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SNX3O60493 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms