Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC17■□□□□ 0.31
TRAV40A0A0B4J280 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
TRAV40A0A0B4J280 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC17■□□□□ 0.31
TRAV40A0A0B4J280 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC17■□□□□ 0.31
TRAV40A0A0B4J280 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
TRAV40A0A0B4J280 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC17■□□□□ 0.31
TRAV40A0A0B4J280 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRAV40A0A0B4J280 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC17■□□□□ 0.31
TRAV40A0A0B4J280 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
TRAV40A0A0B4J280 AL512625.2-201ENST00000417533 625 ntBASIC17■□□□□ 0.31
TRAV40A0A0B4J280 BX276092.2-201ENST00000417668 665 ntBASIC17■□□□□ 0.31
TRAV40A0A0B4J280 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRAV40A0A0B4J280 PBX1-209ENST00000485769 834 ntTSL 2 BASIC17■□□□□ 0.31
TRAV40A0A0B4J280 AL162412.1-201ENST00000567129 965 ntBASIC17■□□□□ 0.31
TRAV40A0A0B4J280 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC17■□□□□ 0.31
TRAV40A0A0B4J280 MARS-234ENST00000630571 216 ntTSL 5 BASIC17■□□□□ 0.31
TRAV40A0A0B4J280 MARS-235ENST00000630803 183 ntTSL 3 BASIC17■□□□□ 0.31
TRAV40A0A0B4J280 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC17■□□□□ 0.31
TRAV40A0A0B4J280 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRAV40A0A0B4J280 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRAV40A0A0B4J280 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRAV40A0A0B4J280 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRAV40A0A0B4J280 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRAV40A0A0B4J280 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRAV40A0A0B4J280 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC17■□□□□ 0.31
TRAV40A0A0B4J280 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
TRAV40A0A0B4J280 NARF-205ENST00000412079 1760 ntTSL 5 BASIC17■□□□□ 0.31
TRAV40A0A0B4J280 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC16.99■□□□□ 0.31
TRAV40A0A0B4J280 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC16.99■□□□□ 0.31
TRAV40A0A0B4J280 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TRAV40A0A0B4J280 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TRAV40A0A0B4J280 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC16.99■□□□□ 0.31
TRAV40A0A0B4J280 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC16.99■□□□□ 0.31
TRAV40A0A0B4J280 RARRES2P4-201ENST00000514074 484 ntBASIC16.99■□□□□ 0.31
TRAV40A0A0B4J280 CD44-222ENST00000526025 1052 ntTSL 2 BASIC16.99■□□□□ 0.31
TRAV40A0A0B4J280 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC16.99■□□□□ 0.31
TRAV40A0A0B4J280 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TRAV40A0A0B4J280 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRAV40A0A0B4J280 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRAV40A0A0B4J280 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRAV40A0A0B4J280 STX5-203ENST00000394690 1568 ntTSL 5 BASIC16.98■□□□□ 0.31
TRAV40A0A0B4J280 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAV40A0A0B4J280 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TRAV40A0A0B4J280 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAV40A0A0B4J280 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAV40A0A0B4J280 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC16.98■□□□□ 0.31
TRAV40A0A0B4J280 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC16.98■□□□□ 0.31
TRAV40A0A0B4J280 PPP1R14BP2-201ENST00000426284 444 ntBASIC16.98■□□□□ 0.31
TRAV40A0A0B4J280 AC073210.2-201ENST00000430369 194 ntBASIC16.98■□□□□ 0.31
TRAV40A0A0B4J280 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC16.98■□□□□ 0.31
TRAV40A0A0B4J280 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC16.98■□□□□ 0.31
TRAV40A0A0B4J280 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC16.98■□□□□ 0.31
TRAV40A0A0B4J280 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
TRAV40A0A0B4J280 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAV40A0A0B4J280 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
TRAV40A0A0B4J280 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRAV40A0A0B4J280 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC16.97■□□□□ 0.31
TRAV40A0A0B4J280 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRAV40A0A0B4J280 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRAV40A0A0B4J280 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TRAV40A0A0B4J280 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
TRAV40A0A0B4J280 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRAV40A0A0B4J280 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRAV40A0A0B4J280 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
TRAV40A0A0B4J280 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC16.97■□□□□ 0.31
TRAV40A0A0B4J280 TSPY20P-201ENST00000450910 630 ntBASIC16.97■□□□□ 0.31
TRAV40A0A0B4J280 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC16.97■□□□□ 0.31
TRAV40A0A0B4J280 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC16.97■□□□□ 0.31
TRAV40A0A0B4J280 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC16.97■□□□□ 0.31
TRAV40A0A0B4J280 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC16.97■□□□□ 0.31
TRAV40A0A0B4J280 AC092118.2-201ENST00000613495 667 ntBASIC16.97■□□□□ 0.31
TRAV40A0A0B4J280 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
TRAV40A0A0B4J280 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRAV40A0A0B4J280 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TRAV40A0A0B4J280 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRAV40A0A0B4J280 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRAV40A0A0B4J280 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TRAV40A0A0B4J280 AC010980.2-201ENST00000587099 1412 ntBASIC16.96■□□□□ 0.31
TRAV40A0A0B4J280 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC16.96■□□□□ 0.31
TRAV40A0A0B4J280 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
TRAV40A0A0B4J280 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRAV40A0A0B4J280 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TRAV40A0A0B4J280 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRAV40A0A0B4J280 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRAV40A0A0B4J280 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRAV40A0A0B4J280 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
TRAV40A0A0B4J280 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
TRAV40A0A0B4J280 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TRAV40A0A0B4J280 CDV3P1-201ENST00000471403 739 ntBASIC16.96■□□□□ 0.31
TRAV40A0A0B4J280 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TRAV40A0A0B4J280 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRAV40A0A0B4J280 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRAV40A0A0B4J280 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRAV40A0A0B4J280 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRAV40A0A0B4J280 ME2-206ENST00000638410 2289 ntTSL 5 BASIC16.96■□□□□ 0.31
TRAV40A0A0B4J280 ME2-210ENST00000639255 2262 ntTSL 5 BASIC16.96■□□□□ 0.31
TRAV40A0A0B4J280 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.3
TRAV40A0A0B4J280 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
TRAV40A0A0B4J280 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC16.96■□□□□ 0.3
TRAV40A0A0B4J280 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms