Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.82■■□□□ 1.08
LIMD1Q9UGP4 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
LIMD1Q9UGP4 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC21.82■■□□□ 1.08
LIMD1Q9UGP4 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LIMD1Q9UGP4 MIR718-201ENST00000390190 70 ntBASIC21.82■■□□□ 1.08
LIMD1Q9UGP4 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
LIMD1Q9UGP4 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC21.82■■□□□ 1.08
LIMD1Q9UGP4 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC21.82■■□□□ 1.08
LIMD1Q9UGP4 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC21.82■■□□□ 1.08
LIMD1Q9UGP4 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC21.82■■□□□ 1.08
LIMD1Q9UGP4 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC21.82■■□□□ 1.08
LIMD1Q9UGP4 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LIMD1Q9UGP4 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
LIMD1Q9UGP4 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LIMD1Q9UGP4 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
LIMD1Q9UGP4 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LIMD1Q9UGP4 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
LIMD1Q9UGP4 KRT17P1-201ENST00000399211 1546 ntBASIC21.81■■□□□ 1.08
LIMD1Q9UGP4 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
LIMD1Q9UGP4 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
LIMD1Q9UGP4 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
LIMD1Q9UGP4 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC21.81■■□□□ 1.08
LIMD1Q9UGP4 RPPH1-201ENST00000516869 333 ntBASIC21.81■■□□□ 1.08
LIMD1Q9UGP4 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC21.81■■□□□ 1.08
LIMD1Q9UGP4 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC21.81■■□□□ 1.08
LIMD1Q9UGP4 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
LIMD1Q9UGP4 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
LIMD1Q9UGP4 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIMD1Q9UGP4 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIMD1Q9UGP4 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
LIMD1Q9UGP4 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.8■■□□□ 1.08
LIMD1Q9UGP4 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
LIMD1Q9UGP4 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIMD1Q9UGP4 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC21.8■■□□□ 1.08
LIMD1Q9UGP4 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIMD1Q9UGP4 NME6-213ENST00000451657 871 ntTSL 2 BASIC21.8■■□□□ 1.08
LIMD1Q9UGP4 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC21.8■■□□□ 1.08
LIMD1Q9UGP4 MIR4497-201ENST00000583208 89 ntBASIC21.8■■□□□ 1.08
LIMD1Q9UGP4 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC21.8■■□□□ 1.08
LIMD1Q9UGP4 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
LIMD1Q9UGP4 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC21.8■■□□□ 1.08
LIMD1Q9UGP4 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC21.8■■□□□ 1.08
LIMD1Q9UGP4 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
LIMD1Q9UGP4 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC21.8■■□□□ 1.08
LIMD1Q9UGP4 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LIMD1Q9UGP4 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
LIMD1Q9UGP4 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LIMD1Q9UGP4 AC061975.6-201ENST00000579045 1553 ntBASIC21.79■■□□□ 1.08
LIMD1Q9UGP4 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LIMD1Q9UGP4 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC21.79■■□□□ 1.08
LIMD1Q9UGP4 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LIMD1Q9UGP4 GXYLT1P3-201ENST00000453058 1193 ntBASIC21.79■■□□□ 1.08
LIMD1Q9UGP4 C1QBPP2-201ENST00000528754 825 ntBASIC21.79■■□□□ 1.08
LIMD1Q9UGP4 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC21.79■■□□□ 1.08
LIMD1Q9UGP4 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC21.79■■□□□ 1.08
LIMD1Q9UGP4 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.79■■□□□ 1.08
LIMD1Q9UGP4 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.79■■□□□ 1.08
LIMD1Q9UGP4 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
LIMD1Q9UGP4 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIMD1Q9UGP4 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIMD1Q9UGP4 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIMD1Q9UGP4 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIMD1Q9UGP4 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIMD1Q9UGP4 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIMD1Q9UGP4 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIMD1Q9UGP4 MIR1224-201ENST00000408193 85 ntBASIC21.78■■□□□ 1.08
LIMD1Q9UGP4 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC21.78■■□□□ 1.08
LIMD1Q9UGP4 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
LIMD1Q9UGP4 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC21.78■■□□□ 1.08
LIMD1Q9UGP4 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC21.78■■□□□ 1.08
LIMD1Q9UGP4 AC073912.3-201ENST00000624414 853 ntBASIC21.78■■□□□ 1.08
LIMD1Q9UGP4 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
LIMD1Q9UGP4 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
LIMD1Q9UGP4 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIMD1Q9UGP4 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.78■■□□□ 1.08
LIMD1Q9UGP4 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIMD1Q9UGP4 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.78■■□□□ 1.08
LIMD1Q9UGP4 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIMD1Q9UGP4 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LIMD1Q9UGP4 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
LIMD1Q9UGP4 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.77■■□□□ 1.08
LIMD1Q9UGP4 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21.77■■□□□ 1.08
LIMD1Q9UGP4 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LIMD1Q9UGP4 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LIMD1Q9UGP4 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC21.77■■□□□ 1.08
LIMD1Q9UGP4 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LIMD1Q9UGP4 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
LIMD1Q9UGP4 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC21.77■■□□□ 1.08
LIMD1Q9UGP4 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LIMD1Q9UGP4 AC060766.5-201ENST00000590539 871 ntBASIC21.77■■□□□ 1.08
LIMD1Q9UGP4 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
LIMD1Q9UGP4 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
LIMD1Q9UGP4 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LIMD1Q9UGP4 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
LIMD1Q9UGP4 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.77■■□□□ 1.07
LIMD1Q9UGP4 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
LIMD1Q9UGP4 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LIMD1Q9UGP4 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LIMD1Q9UGP4 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
LIMD1Q9UGP4 AC211429.1-201ENST00000415277 523 ntBASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms