Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
DDX56Q9NY93 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
DDX56Q9NY93 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
DDX56Q9NY93 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
DDX56Q9NY93 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
DDX56Q9NY93 STOX2-205ENST00000513034 807 ntTSL 3 BASIC21.75■■□□□ 1.07
DDX56Q9NY93 MIR6084-201ENST00000622012 110 ntBASIC21.75■■□□□ 1.07
DDX56Q9NY93 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
DDX56Q9NY93 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
DDX56Q9NY93 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC21.75■■□□□ 1.07
DDX56Q9NY93 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
DDX56Q9NY93 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
DDX56Q9NY93 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.75■■□□□ 1.07
DDX56Q9NY93 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.75■■□□□ 1.07
DDX56Q9NY93 AC121338.2-201ENST00000622535 1744 ntBASIC21.75■■□□□ 1.07
DDX56Q9NY93 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
DDX56Q9NY93 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
DDX56Q9NY93 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC21.74■■□□□ 1.07
DDX56Q9NY93 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
DDX56Q9NY93 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
DDX56Q9NY93 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
DDX56Q9NY93 ERF-202ENST00000440177 2032 ntTSL 2 BASIC21.74■■□□□ 1.07
DDX56Q9NY93 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
DDX56Q9NY93 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC21.74■■□□□ 1.07
DDX56Q9NY93 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC21.74■■□□□ 1.07
DDX56Q9NY93 AP004607.4-201ENST00000530158 1459 ntBASIC21.74■■□□□ 1.07
DDX56Q9NY93 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
DDX56Q9NY93 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
DDX56Q9NY93 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.74■■□□□ 1.07
DDX56Q9NY93 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
DDX56Q9NY93 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
DDX56Q9NY93 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
DDX56Q9NY93 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
DDX56Q9NY93 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC21.74■■□□□ 1.07
DDX56Q9NY93 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
DDX56Q9NY93 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
DDX56Q9NY93 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
DDX56Q9NY93 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
DDX56Q9NY93 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
DDX56Q9NY93 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
DDX56Q9NY93 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
DDX56Q9NY93 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.73■■□□□ 1.07
DDX56Q9NY93 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
DDX56Q9NY93 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
DDX56Q9NY93 AC105265.2-201ENST00000467189 838 ntBASIC21.73■■□□□ 1.07
DDX56Q9NY93 AC079140.4-201ENST00000507448 529 ntBASIC21.73■■□□□ 1.07
DDX56Q9NY93 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
DDX56Q9NY93 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
DDX56Q9NY93 PLK5-205ENST00000642079 1969 ntBASIC21.73■■□□□ 1.07
DDX56Q9NY93 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
DDX56Q9NY93 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.73■■□□□ 1.07
DDX56Q9NY93 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
DDX56Q9NY93 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
DDX56Q9NY93 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.73■■□□□ 1.07
DDX56Q9NY93 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
DDX56Q9NY93 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC21.72■■□□□ 1.07
DDX56Q9NY93 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
DDX56Q9NY93 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
DDX56Q9NY93 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
DDX56Q9NY93 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC21.72■■□□□ 1.07
DDX56Q9NY93 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
DDX56Q9NY93 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
DDX56Q9NY93 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
DDX56Q9NY93 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
DDX56Q9NY93 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
DDX56Q9NY93 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
DDX56Q9NY93 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
DDX56Q9NY93 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC21.71■■□□□ 1.07
DDX56Q9NY93 KRT87P-202ENST00000534226 1464 ntBASIC21.71■■□□□ 1.07
DDX56Q9NY93 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
DDX56Q9NY93 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
DDX56Q9NY93 AC061975.6-201ENST00000579045 1553 ntBASIC21.71■■□□□ 1.07
DDX56Q9NY93 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
DDX56Q9NY93 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
DDX56Q9NY93 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
DDX56Q9NY93 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.71■■□□□ 1.07
DDX56Q9NY93 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
DDX56Q9NY93 AC027612.3-201ENST00000413684 1047 ntBASIC21.71■■□□□ 1.07
DDX56Q9NY93 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC21.71■■□□□ 1.07
DDX56Q9NY93 AC008175.2-201ENST00000612840 297 ntBASIC21.71■■□□□ 1.07
DDX56Q9NY93 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC21.71■■□□□ 1.07
DDX56Q9NY93 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
DDX56Q9NY93 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
DDX56Q9NY93 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
DDX56Q9NY93 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
DDX56Q9NY93 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
DDX56Q9NY93 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
DDX56Q9NY93 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
DDX56Q9NY93 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
DDX56Q9NY93 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
DDX56Q9NY93 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
DDX56Q9NY93 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
DDX56Q9NY93 POU5F1P4-201ENST00000413175 1085 ntBASIC21.7■■□□□ 1.06
DDX56Q9NY93 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
DDX56Q9NY93 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
DDX56Q9NY93 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
DDX56Q9NY93 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
DDX56Q9NY93 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
DDX56Q9NY93 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
DDX56Q9NY93 LINC01521-201ENST00000504184 1943 ntBASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms