Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC26.74■■□□□ 1.87
USP42Q9H9J4 ECEL1P1-201ENST00000373592 1742 ntBASIC26.74■■□□□ 1.87
USP42Q9H9J4 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC26.73■■□□□ 1.87
USP42Q9H9J4 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
USP42Q9H9J4 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
USP42Q9H9J4 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC26.73■■□□□ 1.87
USP42Q9H9J4 AC008550.1-201ENST00000511500 884 ntBASIC26.73■■□□□ 1.87
USP42Q9H9J4 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC26.73■■□□□ 1.87
USP42Q9H9J4 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
USP42Q9H9J4 KRT17P1-201ENST00000399211 1546 ntBASIC26.73■■□□□ 1.87
USP42Q9H9J4 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC26.72■■□□□ 1.87
USP42Q9H9J4 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
USP42Q9H9J4 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC26.72■■□□□ 1.87
USP42Q9H9J4 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
USP42Q9H9J4 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
USP42Q9H9J4 PEX7-202ENST00000367756 680 ntTSL 3 BASIC26.72■■□□□ 1.87
USP42Q9H9J4 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC26.72■■□□□ 1.87
USP42Q9H9J4 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
USP42Q9H9J4 LSM12P1-201ENST00000411836 588 ntBASIC26.72■■□□□ 1.87
USP42Q9H9J4 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC26.72■■□□□ 1.87
USP42Q9H9J4 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC26.72■■□□□ 1.87
USP42Q9H9J4 GATS-209ENST00000454084 1030 ntTSL 3 BASIC26.72■■□□□ 1.87
USP42Q9H9J4 RHOD-202ENST00000532559 538 ntTSL 3 BASIC26.72■■□□□ 1.87
USP42Q9H9J4 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
USP42Q9H9J4 AC008403.3-201ENST00000598924 454 ntBASIC26.72■■□□□ 1.87
USP42Q9H9J4 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
USP42Q9H9J4 RARG-204ENST00000543726 1779 ntTSL 2 BASIC26.72■■□□□ 1.87
USP42Q9H9J4 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
USP42Q9H9J4 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC26.72■■□□□ 1.87
USP42Q9H9J4 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC26.72■■□□□ 1.87
USP42Q9H9J4 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC26.72■■□□□ 1.87
USP42Q9H9J4 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC26.72■■□□□ 1.87
USP42Q9H9J4 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
USP42Q9H9J4 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC26.72■■□□□ 1.87
USP42Q9H9J4 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC26.71■■□□□ 1.87
USP42Q9H9J4 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC26.71■■□□□ 1.87
USP42Q9H9J4 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC26.71■■□□□ 1.87
USP42Q9H9J4 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
USP42Q9H9J4 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
USP42Q9H9J4 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC26.71■■□□□ 1.87
USP42Q9H9J4 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
USP42Q9H9J4 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC26.71■■□□□ 1.87
USP42Q9H9J4 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
USP42Q9H9J4 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
USP42Q9H9J4 AC242852.2-201ENST00000615738 1807 ntBASIC26.71■■□□□ 1.87
USP42Q9H9J4 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC26.71■■□□□ 1.87
USP42Q9H9J4 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC26.71■■□□□ 1.87
USP42Q9H9J4 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC26.7■■□□□ 1.87
USP42Q9H9J4 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
USP42Q9H9J4 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC26.7■■□□□ 1.87
USP42Q9H9J4 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
USP42Q9H9J4 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC26.7■■□□□ 1.87
USP42Q9H9J4 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC26.7■■□□□ 1.87
USP42Q9H9J4 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC26.7■■□□□ 1.87
USP42Q9H9J4 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
USP42Q9H9J4 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC26.7■■□□□ 1.87
USP42Q9H9J4 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
USP42Q9H9J4 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC26.7■■□□□ 1.86
USP42Q9H9J4 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
USP42Q9H9J4 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC26.7■■□□□ 1.86
USP42Q9H9J4 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC26.7■■□□□ 1.86
USP42Q9H9J4 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
USP42Q9H9J4 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC26.69■■□□□ 1.86
USP42Q9H9J4 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC26.69■■□□□ 1.86
USP42Q9H9J4 AL359736.2-201ENST00000621992 437 ntBASIC26.69■■□□□ 1.86
USP42Q9H9J4 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC26.69■■□□□ 1.86
USP42Q9H9J4 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
USP42Q9H9J4 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
USP42Q9H9J4 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC26.69■■□□□ 1.86
USP42Q9H9J4 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC26.69■■□□□ 1.86
USP42Q9H9J4 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC26.68■■□□□ 1.86
USP42Q9H9J4 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
USP42Q9H9J4 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC26.68■■□□□ 1.86
USP42Q9H9J4 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC26.68■■□□□ 1.86
USP42Q9H9J4 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
USP42Q9H9J4 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC26.68■■□□□ 1.86
USP42Q9H9J4 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC26.68■■□□□ 1.86
USP42Q9H9J4 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC26.68■■□□□ 1.86
USP42Q9H9J4 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC26.68■■□□□ 1.86
USP42Q9H9J4 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC26.68■■□□□ 1.86
USP42Q9H9J4 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC26.67■■□□□ 1.86
USP42Q9H9J4 AL355472.2-201ENST00000422958 438 ntBASIC26.67■■□□□ 1.86
USP42Q9H9J4 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
USP42Q9H9J4 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC26.67■■□□□ 1.86
USP42Q9H9J4 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC26.67■■□□□ 1.86
USP42Q9H9J4 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
USP42Q9H9J4 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC26.67■■□□□ 1.86
USP42Q9H9J4 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
USP42Q9H9J4 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
USP42Q9H9J4 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC26.67■■□□□ 1.86
USP42Q9H9J4 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
USP42Q9H9J4 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC26.66■■□□□ 1.86
USP42Q9H9J4 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC26.66■■□□□ 1.86
USP42Q9H9J4 LSR-203ENST00000360798 1963 ntTSL 2 BASIC26.66■■□□□ 1.86
USP42Q9H9J4 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
USP42Q9H9J4 MME-217ENST00000616757 1315 ntTSL 5 BASIC26.66■■□□□ 1.86
USP42Q9H9J4 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC26.66■■□□□ 1.86
USP42Q9H9J4 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC26.65■■□□□ 1.86
USP42Q9H9J4 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC26.65■■□□□ 1.86
USP42Q9H9J4 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC26.65■■□□□ 1.86
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms