Protein–RNA interactions for Protein: Q9H270

VPS11, Vacuolar protein sorting-associated protein 11 homolog, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11Q9H270 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS11Q9H270 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VPS11Q9H270 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS11Q9H270 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
VPS11Q9H270 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS11Q9H270 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.97■□□□□ 0.95
VPS11Q9H270 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS11Q9H270 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS11Q9H270 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
VPS11Q9H270 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VPS11Q9H270 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS11Q9H270 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.96■□□□□ 0.95
VPS11Q9H270 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS11Q9H270 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.96■□□□□ 0.95
VPS11Q9H270 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
VPS11Q9H270 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
VPS11Q9H270 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.96■□□□□ 0.95
VPS11Q9H270 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS11Q9H270 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VPS11Q9H270 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.96■□□□□ 0.95
VPS11Q9H270 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.96■□□□□ 0.95
VPS11Q9H270 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS11Q9H270 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VPS11Q9H270 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
VPS11Q9H270 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.95
VPS11Q9H270 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
VPS11Q9H270 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
VPS11Q9H270 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.95■□□□□ 0.94
VPS11Q9H270 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VPS11Q9H270 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS11Q9H270 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.95■□□□□ 0.94
VPS11Q9H270 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS11Q9H270 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS11Q9H270 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VPS11Q9H270 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
VPS11Q9H270 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.95■□□□□ 0.94
VPS11Q9H270 AC073314.1-201ENST00000568729 2216 ntBASIC20.95■□□□□ 0.94
VPS11Q9H270 SMUG1P1-201ENST00000590640 811 ntBASIC20.95■□□□□ 0.94
VPS11Q9H270 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS11Q9H270 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.95■□□□□ 0.94
VPS11Q9H270 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS11Q9H270 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VPS11Q9H270 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.95■□□□□ 0.94
VPS11Q9H270 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
VPS11Q9H270 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS11Q9H270 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.95■□□□□ 0.94
VPS11Q9H270 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS11Q9H270 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS11Q9H270 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS11Q9H270 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.94■□□□□ 0.94
VPS11Q9H270 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.94■□□□□ 0.94
VPS11Q9H270 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS11Q9H270 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
VPS11Q9H270 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS11Q9H270 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VPS11Q9H270 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.94■□□□□ 0.94
VPS11Q9H270 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS11Q9H270 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS11Q9H270 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.94■□□□□ 0.94
VPS11Q9H270 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
VPS11Q9H270 AL136116.3-201ENST00000402907 1138 ntBASIC20.94■□□□□ 0.94
VPS11Q9H270 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VPS11Q9H270 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
VPS11Q9H270 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.94■□□□□ 0.94
VPS11Q9H270 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.94■□□□□ 0.94
VPS11Q9H270 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.94■□□□□ 0.94
VPS11Q9H270 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC20.94■□□□□ 0.94
VPS11Q9H270 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VPS11Q9H270 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
VPS11Q9H270 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS11Q9H270 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS11Q9H270 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS11Q9H270 AC007952.6-201ENST00000573168 2673 ntBASIC20.93■□□□□ 0.94
VPS11Q9H270 AC003957.1-201ENST00000625108 2673 ntBASIC20.93■□□□□ 0.94
VPS11Q9H270 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS11Q9H270 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS11Q9H270 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS11Q9H270 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS11Q9H270 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS11Q9H270 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.93■□□□□ 0.94
VPS11Q9H270 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS11Q9H270 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS11Q9H270 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS11Q9H270 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.93■□□□□ 0.94
VPS11Q9H270 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.93■□□□□ 0.94
VPS11Q9H270 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.93■□□□□ 0.94
VPS11Q9H270 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.93■□□□□ 0.94
VPS11Q9H270 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.93■□□□□ 0.94
VPS11Q9H270 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VPS11Q9H270 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VPS11Q9H270 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VPS11Q9H270 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS11Q9H270 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS11Q9H270 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS11Q9H270 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VPS11Q9H270 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.93■□□□□ 0.94
VPS11Q9H270 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VPS11Q9H270 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.92■□□□□ 0.94
VPS11Q9H270 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.92■□□□□ 0.94
VPS11Q9H270 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms