Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CLHC1Q8NHS4 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CLHC1Q8NHS4 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CLHC1Q8NHS4 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.03■□□□□ 0.8
CLHC1Q8NHS4 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLHC1Q8NHS4 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.03■□□□□ 0.8
CLHC1Q8NHS4 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLHC1Q8NHS4 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLHC1Q8NHS4 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLHC1Q8NHS4 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.03■□□□□ 0.8
CLHC1Q8NHS4 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLHC1Q8NHS4 LINC01006-201ENST00000333319 2292 ntBASIC20.02■□□□□ 0.8
CLHC1Q8NHS4 BX005040.4-201ENST00000637145 1518 ntBASIC20.02■□□□□ 0.8
CLHC1Q8NHS4 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLHC1Q8NHS4 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLHC1Q8NHS4 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.02■□□□□ 0.8
CLHC1Q8NHS4 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
CLHC1Q8NHS4 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLHC1Q8NHS4 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLHC1Q8NHS4 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
CLHC1Q8NHS4 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.02■□□□□ 0.8
CLHC1Q8NHS4 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.02■□□□□ 0.8
CLHC1Q8NHS4 AL031432.3-201ENST00000607698 485 ntBASIC20.02■□□□□ 0.8
CLHC1Q8NHS4 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLHC1Q8NHS4 RASA4CP-201ENST00000424092 1398 ntBASIC20.02■□□□□ 0.8
CLHC1Q8NHS4 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.02■□□□□ 0.8
CLHC1Q8NHS4 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CLHC1Q8NHS4 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.02■□□□□ 0.8
CLHC1Q8NHS4 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.02■□□□□ 0.8
CLHC1Q8NHS4 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLHC1Q8NHS4 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CLHC1Q8NHS4 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
CLHC1Q8NHS4 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CLHC1Q8NHS4 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CLHC1Q8NHS4 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.02■□□□□ 0.79
CLHC1Q8NHS4 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CLHC1Q8NHS4 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.02■□□□□ 0.79
CLHC1Q8NHS4 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CLHC1Q8NHS4 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
CLHC1Q8NHS4 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CLHC1Q8NHS4 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CLHC1Q8NHS4 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.01■□□□□ 0.79
CLHC1Q8NHS4 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
CLHC1Q8NHS4 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLHC1Q8NHS4 MIR572-201ENST00000384983 95 ntBASIC20.01■□□□□ 0.79
CLHC1Q8NHS4 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLHC1Q8NHS4 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CLHC1Q8NHS4 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.01■□□□□ 0.79
CLHC1Q8NHS4 AL136967.2-201ENST00000623968 743 ntBASIC20.01■□□□□ 0.79
CLHC1Q8NHS4 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLHC1Q8NHS4 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CLHC1Q8NHS4 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLHC1Q8NHS4 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CLHC1Q8NHS4 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.01■□□□□ 0.79
CLHC1Q8NHS4 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.01■□□□□ 0.79
CLHC1Q8NHS4 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLHC1Q8NHS4 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLHC1Q8NHS4 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CLHC1Q8NHS4 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CLHC1Q8NHS4 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20■□□□□ 0.79
CLHC1Q8NHS4 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
CLHC1Q8NHS4 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CLHC1Q8NHS4 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20■□□□□ 0.79
CLHC1Q8NHS4 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC20■□□□□ 0.79
CLHC1Q8NHS4 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20■□□□□ 0.79
CLHC1Q8NHS4 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20■□□□□ 0.79
CLHC1Q8NHS4 AC091305.1-201ENST00000479476 895 ntBASIC20■□□□□ 0.79
CLHC1Q8NHS4 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20■□□□□ 0.79
CLHC1Q8NHS4 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CLHC1Q8NHS4 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
CLHC1Q8NHS4 PLK5-205ENST00000642079 1969 ntBASIC20■□□□□ 0.79
CLHC1Q8NHS4 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
CLHC1Q8NHS4 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20■□□□□ 0.79
CLHC1Q8NHS4 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
CLHC1Q8NHS4 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20■□□□□ 0.79
CLHC1Q8NHS4 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20■□□□□ 0.79
CLHC1Q8NHS4 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
CLHC1Q8NHS4 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
CLHC1Q8NHS4 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20■□□□□ 0.79
CLHC1Q8NHS4 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CLHC1Q8NHS4 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLHC1Q8NHS4 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLHC1Q8NHS4 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLHC1Q8NHS4 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
CLHC1Q8NHS4 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.99■□□□□ 0.79
CLHC1Q8NHS4 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLHC1Q8NHS4 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLHC1Q8NHS4 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.99■□□□□ 0.79
CLHC1Q8NHS4 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.99■□□□□ 0.79
CLHC1Q8NHS4 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLHC1Q8NHS4 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CLHC1Q8NHS4 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CLHC1Q8NHS4 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC19.99■□□□□ 0.79
CLHC1Q8NHS4 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CLHC1Q8NHS4 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CLHC1Q8NHS4 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.98■□□□□ 0.79
CLHC1Q8NHS4 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
CLHC1Q8NHS4 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CLHC1Q8NHS4 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.98■□□□□ 0.79
CLHC1Q8NHS4 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms