Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 CASP6-205ENST00000505486 538 ntTSL 4 BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC6.4□□□□□ -1.38
SYNE1Q8NF91 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC6.4□□□□□ -1.38
SYNE1Q8NF91 DUSP5P2-201ENST00000426873 1033 ntBASIC6.4□□□□□ -1.38
SYNE1Q8NF91 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
SYNE1Q8NF91 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC6.4□□□□□ -1.38
SYNE1Q8NF91 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
SYNE1Q8NF91 PARP1-202ENST00000366792 553 ntTSL 3 BASIC6.4□□□□□ -1.38
SYNE1Q8NF91 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
SYNE1Q8NF91 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
SYNE1Q8NF91 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
SYNE1Q8NF91 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
SYNE1Q8NF91 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
SYNE1Q8NF91 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
SYNE1Q8NF91 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC6.4□□□□□ -1.38
SYNE1Q8NF91 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC6.4□□□□□ -1.38
SYNE1Q8NF91 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC6.4□□□□□ -1.38
SYNE1Q8NF91 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC6.4□□□□□ -1.38
SYNE1Q8NF91 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
SYNE1Q8NF91 OR7E47P-201ENST00000546390 1422 ntBASIC6.4□□□□□ -1.38
SYNE1Q8NF91 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.38
SYNE1Q8NF91 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.38
SYNE1Q8NF91 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
SYNE1Q8NF91 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
SYNE1Q8NF91 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC6.4□□□□□ -1.38
SYNE1Q8NF91 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.38
SYNE1Q8NF91 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
SYNE1Q8NF91 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
SYNE1Q8NF91 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC6.4□□□□□ -1.38
SYNE1Q8NF91 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC6.4□□□□□ -1.38
SYNE1Q8NF91 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
SYNE1Q8NF91 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC6.4□□□□□ -1.38
SYNE1Q8NF91 ME2-206ENST00000638410 2289 ntTSL 5 BASIC6.4□□□□□ -1.38
SYNE1Q8NF91 ME2-210ENST00000639255 2262 ntTSL 5 BASIC6.4□□□□□ -1.38
SYNE1Q8NF91 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
SYNE1Q8NF91 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC6.4□□□□□ -1.39
SYNE1Q8NF91 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
SYNE1Q8NF91 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
SYNE1Q8NF91 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.39
SYNE1Q8NF91 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
SYNE1Q8NF91 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
SYNE1Q8NF91 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.39
SYNE1Q8NF91 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
SYNE1Q8NF91 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
SYNE1Q8NF91 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
SYNE1Q8NF91 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.39
SYNE1Q8NF91 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC6.4□□□□□ -1.39
SYNE1Q8NF91 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC6.4□□□□□ -1.39
SYNE1Q8NF91 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC6.4□□□□□ -1.39
SYNE1Q8NF91 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC6.4□□□□□ -1.39
SYNE1Q8NF91 AC133552.2-202ENST00000575694 574 ntBASIC6.4□□□□□ -1.39
SYNE1Q8NF91 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC6.4□□□□□ -1.39
SYNE1Q8NF91 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
SYNE1Q8NF91 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
SYNE1Q8NF91 STK25-234ENST00000535007 2459 ntTSL 2 BASIC6.4□□□□□ -1.39
SYNE1Q8NF91 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
SYNE1Q8NF91 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC6.4□□□□□ -1.39
SYNE1Q8NF91 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 AC128676.1-201ENST00000454392 318 ntBASIC6.39□□□□□ -1.39
SYNE1Q8NF91 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 GCSHP5-201ENST00000443090 522 ntBASIC6.39□□□□□ -1.39
SYNE1Q8NF91 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms