Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC25.04■■□□□ 1.6
SMC1BQ8NDV3 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC25.03■■□□□ 1.6
SMC1BQ8NDV3 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
SMC1BQ8NDV3 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
SMC1BQ8NDV3 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC25.03■■□□□ 1.6
SMC1BQ8NDV3 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
SMC1BQ8NDV3 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
SMC1BQ8NDV3 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC25.03■■□□□ 1.6
SMC1BQ8NDV3 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC25.03■■□□□ 1.6
SMC1BQ8NDV3 MIR6786-201ENST00000616843 113 ntBASIC25.03■■□□□ 1.6
SMC1BQ8NDV3 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC25.03■■□□□ 1.6
SMC1BQ8NDV3 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC25.03■■□□□ 1.6
SMC1BQ8NDV3 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
SMC1BQ8NDV3 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
SMC1BQ8NDV3 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
SMC1BQ8NDV3 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC25.02■■□□□ 1.6
SMC1BQ8NDV3 AC145676.1-201ENST00000514988 2004 ntBASIC25.02■■□□□ 1.6
SMC1BQ8NDV3 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
SMC1BQ8NDV3 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC25.02■■□□□ 1.6
SMC1BQ8NDV3 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
SMC1BQ8NDV3 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
SMC1BQ8NDV3 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
SMC1BQ8NDV3 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC25.02■■□□□ 1.6
SMC1BQ8NDV3 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC25.02■■□□□ 1.6
SMC1BQ8NDV3 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC25.02■■□□□ 1.6
SMC1BQ8NDV3 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC25.02■■□□□ 1.6
SMC1BQ8NDV3 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC25.02■■□□□ 1.6
SMC1BQ8NDV3 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
SMC1BQ8NDV3 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC25.02■■□□□ 1.6
SMC1BQ8NDV3 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC25.02■■□□□ 1.6
SMC1BQ8NDV3 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
SMC1BQ8NDV3 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
SMC1BQ8NDV3 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC25.02■■□□□ 1.6
SMC1BQ8NDV3 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
SMC1BQ8NDV3 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC25.01■■□□□ 1.59
SMC1BQ8NDV3 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
SMC1BQ8NDV3 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
SMC1BQ8NDV3 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
SMC1BQ8NDV3 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC25.01■■□□□ 1.59
SMC1BQ8NDV3 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC25.01■■□□□ 1.59
SMC1BQ8NDV3 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC25.01■■□□□ 1.59
SMC1BQ8NDV3 AP003071.4-201ENST00000562276 1284 ntBASIC25.01■■□□□ 1.59
SMC1BQ8NDV3 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC25.01■■□□□ 1.59
SMC1BQ8NDV3 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC25.01■■□□□ 1.59
SMC1BQ8NDV3 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
SMC1BQ8NDV3 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
SMC1BQ8NDV3 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
SMC1BQ8NDV3 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC25■■□□□ 1.59
SMC1BQ8NDV3 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC25■■□□□ 1.59
SMC1BQ8NDV3 THEM4-205ENST00000489410 643 ntTSL 2 BASIC25■■□□□ 1.59
SMC1BQ8NDV3 USF2-205ENST00000594064 1179 ntTSL 2 BASIC25■■□□□ 1.59
SMC1BQ8NDV3 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
SMC1BQ8NDV3 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC25■■□□□ 1.59
SMC1BQ8NDV3 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
SMC1BQ8NDV3 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
SMC1BQ8NDV3 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC25■■□□□ 1.59
SMC1BQ8NDV3 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
SMC1BQ8NDV3 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
SMC1BQ8NDV3 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC24.99■■□□□ 1.59
SMC1BQ8NDV3 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC24.99■■□□□ 1.59
SMC1BQ8NDV3 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC24.99■■□□□ 1.59
SMC1BQ8NDV3 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC24.99■■□□□ 1.59
SMC1BQ8NDV3 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC24.99■■□□□ 1.59
SMC1BQ8NDV3 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC24.99■■□□□ 1.59
SMC1BQ8NDV3 KRT18P68-201ENST00000392293 1000 ntBASIC24.99■■□□□ 1.59
SMC1BQ8NDV3 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC24.99■■□□□ 1.59
SMC1BQ8NDV3 KRASP1-201ENST00000407852 552 ntBASIC24.99■■□□□ 1.59
SMC1BQ8NDV3 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC24.99■■□□□ 1.59
SMC1BQ8NDV3 CDV3P1-201ENST00000471403 739 ntBASIC24.99■■□□□ 1.59
SMC1BQ8NDV3 NXN-202ENST00000537628 1340 ntTSL 3 BASIC24.99■■□□□ 1.59
SMC1BQ8NDV3 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC24.99■■□□□ 1.59
SMC1BQ8NDV3 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
SMC1BQ8NDV3 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC24.99■■□□□ 1.59
SMC1BQ8NDV3 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC24.98■■□□□ 1.59
SMC1BQ8NDV3 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
SMC1BQ8NDV3 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC24.98■■□□□ 1.59
SMC1BQ8NDV3 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
SMC1BQ8NDV3 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC24.98■■□□□ 1.59
SMC1BQ8NDV3 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC24.98■■□□□ 1.59
SMC1BQ8NDV3 CABP2-204ENST00000636477 941 ntTSL 5 BASIC24.98■■□□□ 1.59
SMC1BQ8NDV3 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
SMC1BQ8NDV3 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC24.97■■□□□ 1.59
SMC1BQ8NDV3 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
SMC1BQ8NDV3 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC24.97■■□□□ 1.59
SMC1BQ8NDV3 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC24.97■■□□□ 1.59
SMC1BQ8NDV3 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
SMC1BQ8NDV3 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC24.97■■□□□ 1.59
SMC1BQ8NDV3 NTF6B-201ENST00000591913 560 ntBASIC24.97■■□□□ 1.59
SMC1BQ8NDV3 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC24.97■■□□□ 1.59
SMC1BQ8NDV3 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC24.97■■□□□ 1.59
SMC1BQ8NDV3 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
SMC1BQ8NDV3 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
SMC1BQ8NDV3 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC24.96■■□□□ 1.59
SMC1BQ8NDV3 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
SMC1BQ8NDV3 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC24.96■■□□□ 1.59
SMC1BQ8NDV3 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
SMC1BQ8NDV3 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC24.96■■□□□ 1.59
SMC1BQ8NDV3 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC24.96■■□□□ 1.59
SMC1BQ8NDV3 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC24.96■■□□□ 1.59
SMC1BQ8NDV3 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms