Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC17.23■□□□□ 0.35
PDLIM3Q53GG5 AC093827.2-201ENST00000512654 315 ntBASIC17.23■□□□□ 0.35
PDLIM3Q53GG5 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC17.23■□□□□ 0.35
PDLIM3Q53GG5 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC17.23■□□□□ 0.35
PDLIM3Q53GG5 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PDLIM3Q53GG5 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PDLIM3Q53GG5 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PDLIM3Q53GG5 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PDLIM3Q53GG5 AC068587.7-201ENST00000641602 218 ntBASIC17.23■□□□□ 0.35
PDLIM3Q53GG5 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PDLIM3Q53GG5 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
PDLIM3Q53GG5 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC17.23■□□□□ 0.35
PDLIM3Q53GG5 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PDLIM3Q53GG5 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PDLIM3Q53GG5 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PDLIM3Q53GG5 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC17.23■□□□□ 0.35
PDLIM3Q53GG5 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC17.23■□□□□ 0.35
PDLIM3Q53GG5 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC17.22■□□□□ 0.35
PDLIM3Q53GG5 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PDLIM3Q53GG5 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PDLIM3Q53GG5 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PDLIM3Q53GG5 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PDLIM3Q53GG5 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
PDLIM3Q53GG5 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PDLIM3Q53GG5 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PDLIM3Q53GG5 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PDLIM3Q53GG5 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC17.22■□□□□ 0.35
PDLIM3Q53GG5 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
PDLIM3Q53GG5 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC17.22■□□□□ 0.35
PDLIM3Q53GG5 AC099791.2-201ENST00000605725 427 ntBASIC17.22■□□□□ 0.35
PDLIM3Q53GG5 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
PDLIM3Q53GG5 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
PDLIM3Q53GG5 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
PDLIM3Q53GG5 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PDLIM3Q53GG5 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC17.21■□□□□ 0.35
PDLIM3Q53GG5 AC133637.1-201ENST00000624115 1537 ntBASIC17.21■□□□□ 0.35
PDLIM3Q53GG5 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
PDLIM3Q53GG5 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PDLIM3Q53GG5 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PDLIM3Q53GG5 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PDLIM3Q53GG5 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
PDLIM3Q53GG5 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PDLIM3Q53GG5 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PDLIM3Q53GG5 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PDLIM3Q53GG5 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
PDLIM3Q53GG5 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC17.21■□□□□ 0.35
PDLIM3Q53GG5 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PDLIM3Q53GG5 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
PDLIM3Q53GG5 BX842568.3-201ENST00000418104 571 ntBASIC17.21■□□□□ 0.35
PDLIM3Q53GG5 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PDLIM3Q53GG5 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
PDLIM3Q53GG5 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC17.21■□□□□ 0.35
PDLIM3Q53GG5 RAP2CP1-201ENST00000605103 478 ntBASIC17.21■□□□□ 0.35
PDLIM3Q53GG5 AL358852.1-201ENST00000623174 1268 ntBASIC17.21■□□□□ 0.35
PDLIM3Q53GG5 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
PDLIM3Q53GG5 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
PDLIM3Q53GG5 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PDLIM3Q53GG5 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PDLIM3Q53GG5 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC17.21■□□□□ 0.35
PDLIM3Q53GG5 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC17.21■□□□□ 0.35
PDLIM3Q53GG5 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PDLIM3Q53GG5 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PDLIM3Q53GG5 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
PDLIM3Q53GG5 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
PDLIM3Q53GG5 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
PDLIM3Q53GG5 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
PDLIM3Q53GG5 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC17.2■□□□□ 0.34
PDLIM3Q53GG5 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
PDLIM3Q53GG5 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
PDLIM3Q53GG5 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.2■□□□□ 0.34
PDLIM3Q53GG5 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PDLIM3Q53GG5 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PDLIM3Q53GG5 STX4-202ENST00000394998 1498 ntTSL 2 BASIC17.2■□□□□ 0.34
PDLIM3Q53GG5 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PDLIM3Q53GG5 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC17.2■□□□□ 0.34
PDLIM3Q53GG5 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PDLIM3Q53GG5 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC17.2■□□□□ 0.34
PDLIM3Q53GG5 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC17.2■□□□□ 0.34
PDLIM3Q53GG5 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PDLIM3Q53GG5 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC17.2■□□□□ 0.34
PDLIM3Q53GG5 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC17.2■□□□□ 0.34
PDLIM3Q53GG5 CCDC92B-201ENST00000575506 885 ntBASIC17.2■□□□□ 0.34
PDLIM3Q53GG5 AL109923.1-201ENST00000618799 583 ntBASIC17.2■□□□□ 0.34
PDLIM3Q53GG5 AC136469.2-201ENST00000623944 1028 ntBASIC17.2■□□□□ 0.34
PDLIM3Q53GG5 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC17.2■□□□□ 0.34
PDLIM3Q53GG5 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
PDLIM3Q53GG5 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
PDLIM3Q53GG5 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PDLIM3Q53GG5 OR7E47P-201ENST00000546390 1422 ntBASIC17.2■□□□□ 0.34
PDLIM3Q53GG5 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
PDLIM3Q53GG5 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PDLIM3Q53GG5 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PDLIM3Q53GG5 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PDLIM3Q53GG5 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PDLIM3Q53GG5 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PDLIM3Q53GG5 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC17.19■□□□□ 0.34
PDLIM3Q53GG5 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
PDLIM3Q53GG5 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PDLIM3Q53GG5 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PDLIM3Q53GG5 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms