Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC15.37■□□□□ 0.05
PRKDCP78527 OR7E47P-201ENST00000546390 1422 ntBASIC15.37■□□□□ 0.05
PRKDCP78527 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PRKDCP78527 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC15.37■□□□□ 0.05
PRKDCP78527 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC15.37■□□□□ 0.05
PRKDCP78527 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC15.37■□□□□ 0.05
PRKDCP78527 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC15.37■□□□□ 0.05
PRKDCP78527 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC15.37■□□□□ 0.05
PRKDCP78527 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PRKDCP78527 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PRKDCP78527 AC145676.1-201ENST00000514988 2004 ntBASIC15.37■□□□□ 0.05
PRKDCP78527 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PRKDCP78527 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PRKDCP78527 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC15.37■□□□□ 0.05
PRKDCP78527 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PRKDCP78527 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC15.37■□□□□ 0.05
PRKDCP78527 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC15.37■□□□□ 0.05
PRKDCP78527 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PRKDCP78527 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PRKDCP78527 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PRKDCP78527 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PRKDCP78527 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PRKDCP78527 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PRKDCP78527 ISCU-203ENST00000431221 799 ntTSL 2 BASIC15.36■□□□□ 0.05
PRKDCP78527 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC15.36■□□□□ 0.05
PRKDCP78527 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC15.36■□□□□ 0.05
PRKDCP78527 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PRKDCP78527 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC15.36■□□□□ 0.05
PRKDCP78527 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC15.36■□□□□ 0.05
PRKDCP78527 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC15.36■□□□□ 0.05
PRKDCP78527 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PRKDCP78527 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC15.36■□□□□ 0.05
PRKDCP78527 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PRKDCP78527 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC15.36■□□□□ 0.05
PRKDCP78527 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC15.36■□□□□ 0.05
PRKDCP78527 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC15.36■□□□□ 0.05
PRKDCP78527 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC15.36■□□□□ 0.05
PRKDCP78527 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
PRKDCP78527 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PRKDCP78527 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
PRKDCP78527 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
PRKDCP78527 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC15.36■□□□□ 0.05
PRKDCP78527 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
PRKDCP78527 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC15.36■□□□□ 0.05
PRKDCP78527 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
PRKDCP78527 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
PRKDCP78527 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PRKDCP78527 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PRKDCP78527 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PRKDCP78527 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PRKDCP78527 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC15.35■□□□□ 0.05
PRKDCP78527 THRA-202ENST00000394121 2260 ntTSL 2 BASIC15.35■□□□□ 0.05
PRKDCP78527 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
PRKDCP78527 AC009947.2-201ENST00000444014 672 ntBASIC15.35■□□□□ 0.05
PRKDCP78527 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC15.35■□□□□ 0.05
PRKDCP78527 AC006011.2-201ENST00000621313 1158 ntBASIC15.35■□□□□ 0.05
PRKDCP78527 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC15.35■□□□□ 0.05
PRKDCP78527 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC15.35■□□□□ 0.05
PRKDCP78527 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC15.35■□□□□ 0.05
PRKDCP78527 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC15.35■□□□□ 0.05
PRKDCP78527 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PRKDCP78527 GLDC-219ENST00000640208 420 ntTSL 2 BASIC15.35■□□□□ 0.05
PRKDCP78527 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
PRKDCP78527 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
PRKDCP78527 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PRKDCP78527 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
PRKDCP78527 CYP2D8P-201ENST00000433633 1490 ntBASIC15.34■□□□□ 0.05
PRKDCP78527 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
PRKDCP78527 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
PRKDCP78527 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC15.34■□□□□ 0.05
PRKDCP78527 LTBR-211ENST00000543190 785 ntTSL 3 BASIC15.34■□□□□ 0.05
PRKDCP78527 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC15.34■□□□□ 0.05
PRKDCP78527 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC15.34■□□□□ 0.05
PRKDCP78527 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PRKDCP78527 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PRKDCP78527 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
PRKDCP78527 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PRKDCP78527 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PRKDCP78527 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PRKDCP78527 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC15.34■□□□□ 0.05
PRKDCP78527 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC15.34■□□□□ 0.05
PRKDCP78527 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
PRKDCP78527 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
PRKDCP78527 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
PRKDCP78527 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC15.34■□□□□ 0.05
PRKDCP78527 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PRKDCP78527 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PRKDCP78527 AL121749.1-202ENST00000609313 2153 ntBASIC15.34■□□□□ 0.05
PRKDCP78527 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
PRKDCP78527 MFF-205ENST00000354503 1085 ntTSL 2 BASIC15.33■□□□□ 0.05
PRKDCP78527 DUX4L26-201ENST00000489078 1255 ntBASIC15.33■□□□□ 0.05
PRKDCP78527 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC15.33■□□□□ 0.05
PRKDCP78527 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
PRKDCP78527 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
PRKDCP78527 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
PRKDCP78527 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC15.33■□□□□ 0.04
PRKDCP78527 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PRKDCP78527 AC053503.5-201ENST00000601508 636 ntBASIC15.33■□□□□ 0.04
PRKDCP78527 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
PRKDCP78527 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms