Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CKS1BP61024 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
CKS1BP61024 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CKS1BP61024 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CKS1BP61024 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CKS1BP61024 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
CKS1BP61024 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CKS1BP61024 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CKS1BP61024 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CKS1BP61024 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CKS1BP61024 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC14.52□□□□□ -0.08
CKS1BP61024 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC14.52□□□□□ -0.08
CKS1BP61024 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
CKS1BP61024 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
CKS1BP61024 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
CKS1BP61024 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CKS1BP61024 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CKS1BP61024 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CKS1BP61024 BX664725.1-201ENST00000438252 379 ntBASIC14.52□□□□□ -0.09
CKS1BP61024 DUX4L4-201ENST00000566884 1269 ntBASIC14.52□□□□□ -0.09
CKS1BP61024 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.09
CKS1BP61024 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC14.52□□□□□ -0.09
CKS1BP61024 AL031848.2-201ENST00000607670 837 ntBASIC14.52□□□□□ -0.09
CKS1BP61024 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CKS1BP61024 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CKS1BP61024 FAM99A-202ENST00000538190 1989 ntBASIC14.52□□□□□ -0.09
CKS1BP61024 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CKS1BP61024 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
CKS1BP61024 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
CKS1BP61024 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC14.52□□□□□ -0.09
CKS1BP61024 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
CKS1BP61024 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC14.52□□□□□ -0.09
CKS1BP61024 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC14.52□□□□□ -0.09
CKS1BP61024 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CKS1BP61024 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CKS1BP61024 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
CKS1BP61024 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CKS1BP61024 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
CKS1BP61024 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC14.51□□□□□ -0.09
CKS1BP61024 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CKS1BP61024 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
CKS1BP61024 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
CKS1BP61024 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC14.51□□□□□ -0.09
CKS1BP61024 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC14.51□□□□□ -0.09
CKS1BP61024 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
CKS1BP61024 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC14.51□□□□□ -0.09
CKS1BP61024 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CKS1BP61024 AC103724.3-201ENST00000564481 992 ntBASIC14.51□□□□□ -0.09
CKS1BP61024 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC14.51□□□□□ -0.09
CKS1BP61024 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
CKS1BP61024 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CKS1BP61024 NOC2LP1-202ENST00000452600 2235 ntBASIC14.51□□□□□ -0.09
CKS1BP61024 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CKS1BP61024 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC14.51□□□□□ -0.09
CKS1BP61024 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CKS1BP61024 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC14.51□□□□□ -0.09
CKS1BP61024 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC14.51□□□□□ -0.09
CKS1BP61024 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
CKS1BP61024 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC14.51□□□□□ -0.09
CKS1BP61024 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
CKS1BP61024 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CKS1BP61024 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CKS1BP61024 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CKS1BP61024 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CKS1BP61024 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
CKS1BP61024 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CKS1BP61024 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CKS1BP61024 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CKS1BP61024 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CKS1BP61024 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CKS1BP61024 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC14.5□□□□□ -0.09
CKS1BP61024 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC14.5□□□□□ -0.09
CKS1BP61024 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CKS1BP61024 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CKS1BP61024 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC14.5□□□□□ -0.09
CKS1BP61024 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CKS1BP61024 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC14.5□□□□□ -0.09
CKS1BP61024 AC004687.1-201ENST00000579003 1625 ntBASIC14.5□□□□□ -0.09
CKS1BP61024 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
CKS1BP61024 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CKS1BP61024 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CKS1BP61024 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CKS1BP61024 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC14.5□□□□□ -0.09
CKS1BP61024 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CKS1BP61024 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CKS1BP61024 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CKS1BP61024 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CKS1BP61024 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CKS1BP61024 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CKS1BP61024 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CKS1BP61024 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
CKS1BP61024 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CKS1BP61024 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CKS1BP61024 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CKS1BP61024 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CKS1BP61024 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CKS1BP61024 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CKS1BP61024 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
CKS1BP61024 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
CKS1BP61024 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms