Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC19.08■□□□□ 0.64
CDH11P55287 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CDH11P55287 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
CDH11P55287 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CDH11P55287 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CDH11P55287 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.08■□□□□ 0.64
CDH11P55287 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
CDH11P55287 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.07■□□□□ 0.64
CDH11P55287 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDH11P55287 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDH11P55287 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.07■□□□□ 0.64
CDH11P55287 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDH11P55287 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDH11P55287 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDH11P55287 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDH11P55287 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CDH11P55287 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
CDH11P55287 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDH11P55287 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CDH11P55287 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDH11P55287 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CDH11P55287 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDH11P55287 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
CDH11P55287 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDH11P55287 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CDH11P55287 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
CDH11P55287 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.06■□□□□ 0.64
CDH11P55287 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.06■□□□□ 0.64
CDH11P55287 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDH11P55287 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CDH11P55287 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC19.06■□□□□ 0.64
CDH11P55287 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDH11P55287 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDH11P55287 AC010141.3-201ENST00000456659 717 ntBASIC19.06■□□□□ 0.64
CDH11P55287 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC19.06■□□□□ 0.64
CDH11P55287 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC19.06■□□□□ 0.64
CDH11P55287 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.06■□□□□ 0.64
CDH11P55287 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC19.06■□□□□ 0.64
CDH11P55287 AL358852.1-201ENST00000623174 1268 ntBASIC19.06■□□□□ 0.64
CDH11P55287 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDH11P55287 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CDH11P55287 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDH11P55287 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDH11P55287 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDH11P55287 FEM1AP1-201ENST00000431297 1995 ntBASIC19.05■□□□□ 0.64
CDH11P55287 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDH11P55287 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDH11P55287 MIR572-201ENST00000384983 95 ntBASIC19.05■□□□□ 0.64
CDH11P55287 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC19.05■□□□□ 0.64
CDH11P55287 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDH11P55287 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDH11P55287 AL162430.1-201ENST00000480705 870 ntBASIC19.05■□□□□ 0.64
CDH11P55287 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC19.05■□□□□ 0.64
CDH11P55287 AL034346.1-201ENST00000568244 1277 ntBASIC19.05■□□□□ 0.64
CDH11P55287 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDH11P55287 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.05■□□□□ 0.64
CDH11P55287 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
CDH11P55287 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDH11P55287 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDH11P55287 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
CDH11P55287 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH11P55287 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH11P55287 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
CDH11P55287 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH11P55287 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH11P55287 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.04■□□□□ 0.64
CDH11P55287 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.04■□□□□ 0.64
CDH11P55287 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
CDH11P55287 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH11P55287 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
CDH11P55287 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH11P55287 YBX1P1-201ENST00000445822 960 ntBASIC19.04■□□□□ 0.64
CDH11P55287 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC19.04■□□□□ 0.64
CDH11P55287 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CDH11P55287 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
CDH11P55287 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH11P55287 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH11P55287 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC19.04■□□□□ 0.64
CDH11P55287 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH11P55287 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH11P55287 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CDH11P55287 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC19.03■□□□□ 0.64
CDH11P55287 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CDH11P55287 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CDH11P55287 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CDH11P55287 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.03■□□□□ 0.64
CDH11P55287 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CDH11P55287 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CDH11P55287 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.03■□□□□ 0.64
CDH11P55287 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC19.03■□□□□ 0.64
CDH11P55287 AC012414.1-201ENST00000556676 535 ntBASIC19.03■□□□□ 0.64
CDH11P55287 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC19.03■□□□□ 0.64
CDH11P55287 MIR6084-201ENST00000622012 110 ntBASIC19.03■□□□□ 0.64
CDH11P55287 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CDH11P55287 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CDH11P55287 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
CDH11P55287 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
CDH11P55287 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CDH11P55287 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CDH11P55287 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms