Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.51■■□□□ 1.03
NEK3P51956 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.51■■□□□ 1.03
NEK3P51956 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NEK3P51956 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NEK3P51956 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC21.51■■□□□ 1.03
NEK3P51956 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NEK3P51956 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
NEK3P51956 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC21.51■■□□□ 1.03
NEK3P51956 VPS53-216ENST00000574029 585 ntTSL 4 BASIC21.51■■□□□ 1.03
NEK3P51956 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
NEK3P51956 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
NEK3P51956 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
NEK3P51956 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NEK3P51956 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
NEK3P51956 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC21.5■■□□□ 1.03
NEK3P51956 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
NEK3P51956 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.5■■□□□ 1.03
NEK3P51956 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
NEK3P51956 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NEK3P51956 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
NEK3P51956 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC21.5■■□□□ 1.03
NEK3P51956 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NEK3P51956 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
NEK3P51956 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
NEK3P51956 AC090192.1-201ENST00000517740 490 ntBASIC21.5■■□□□ 1.03
NEK3P51956 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC21.5■■□□□ 1.03
NEK3P51956 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC21.5■■□□□ 1.03
NEK3P51956 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC21.5■■□□□ 1.03
NEK3P51956 AC104187.1-201ENST00000607510 612 ntBASIC21.5■■□□□ 1.03
NEK3P51956 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NEK3P51956 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
NEK3P51956 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
NEK3P51956 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
NEK3P51956 AP006587.3-201ENST00000525742 1516 ntBASIC21.5■■□□□ 1.03
NEK3P51956 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
NEK3P51956 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
NEK3P51956 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
NEK3P51956 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
NEK3P51956 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
NEK3P51956 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
NEK3P51956 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.49■■□□□ 1.03
NEK3P51956 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
NEK3P51956 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
NEK3P51956 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NEK3P51956 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NEK3P51956 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NEK3P51956 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NEK3P51956 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC21.49■■□□□ 1.03
NEK3P51956 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC21.49■■□□□ 1.03
NEK3P51956 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC21.49■■□□□ 1.03
NEK3P51956 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NEK3P51956 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC21.49■■□□□ 1.03
NEK3P51956 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC21.49■■□□□ 1.03
NEK3P51956 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NEK3P51956 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NEK3P51956 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.49■■□□□ 1.03
NEK3P51956 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
NEK3P51956 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
NEK3P51956 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
NEK3P51956 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
NEK3P51956 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.48■■□□□ 1.03
NEK3P51956 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
NEK3P51956 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
NEK3P51956 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC21.48■■□□□ 1.03
NEK3P51956 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC21.48■■□□□ 1.03
NEK3P51956 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
NEK3P51956 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
NEK3P51956 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.48■■□□□ 1.03
NEK3P51956 GAS2L1P2-201ENST00000436355 1356 ntBASIC21.48■■□□□ 1.03
NEK3P51956 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
NEK3P51956 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NEK3P51956 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
NEK3P51956 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.47■■□□□ 1.03
NEK3P51956 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
NEK3P51956 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.47■■□□□ 1.03
NEK3P51956 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC21.47■■□□□ 1.03
NEK3P51956 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
NEK3P51956 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NEK3P51956 WWOX-218ENST00000627394 894 ntTSL 5 BASIC21.47■■□□□ 1.03
NEK3P51956 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NEK3P51956 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
NEK3P51956 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NEK3P51956 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NEK3P51956 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
NEK3P51956 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NEK3P51956 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
NEK3P51956 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC21.47■■□□□ 1.03
NEK3P51956 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
NEK3P51956 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NEK3P51956 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
NEK3P51956 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
NEK3P51956 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
NEK3P51956 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
NEK3P51956 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
NEK3P51956 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
NEK3P51956 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC21.46■■□□□ 1.03
NEK3P51956 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC21.46■■□□□ 1.03
NEK3P51956 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
NEK3P51956 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC21.46■■□□□ 1.03
NEK3P51956 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms