Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC18.34■□□□□ 0.53
SOX2P48431 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.34■□□□□ 0.53
SOX2P48431 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SOX2P48431 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC18.34■□□□□ 0.53
SOX2P48431 PLK5-205ENST00000642079 1969 ntBASIC18.34■□□□□ 0.53
SOX2P48431 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SOX2P48431 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SOX2P48431 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SOX2P48431 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SOX2P48431 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
SOX2P48431 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SOX2P48431 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SOX2P48431 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.34■□□□□ 0.53
SOX2P48431 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC18.34■□□□□ 0.53
SOX2P48431 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SOX2P48431 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
SOX2P48431 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SOX2P48431 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
SOX2P48431 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC18.33■□□□□ 0.53
SOX2P48431 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.33■□□□□ 0.53
SOX2P48431 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
SOX2P48431 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SOX2P48431 AP005435.1-201ENST00000529293 1178 ntBASIC18.33■□□□□ 0.52
SOX2P48431 SRR-208ENST00000576848 588 ntTSL 4 BASIC18.33■□□□□ 0.52
SOX2P48431 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SOX2P48431 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC18.33■□□□□ 0.52
SOX2P48431 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SOX2P48431 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SOX2P48431 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SOX2P48431 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SOX2P48431 AC073314.1-201ENST00000568729 2216 ntBASIC18.33■□□□□ 0.52
SOX2P48431 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC18.33■□□□□ 0.52
SOX2P48431 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SOX2P48431 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SOX2P48431 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC18.32■□□□□ 0.52
SOX2P48431 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SOX2P48431 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SOX2P48431 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SOX2P48431 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SOX2P48431 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC18.32■□□□□ 0.52
SOX2P48431 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
SOX2P48431 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.32■□□□□ 0.52
SOX2P48431 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
SOX2P48431 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
SOX2P48431 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SOX2P48431 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SOX2P48431 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SOX2P48431 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SOX2P48431 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
SOX2P48431 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SOX2P48431 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC18.31■□□□□ 0.52
SOX2P48431 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
SOX2P48431 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SOX2P48431 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SOX2P48431 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SOX2P48431 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SOX2P48431 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SOX2P48431 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
SOX2P48431 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC18.31■□□□□ 0.52
SOX2P48431 AL138724.1-201ENST00000606771 1088 ntBASIC18.31■□□□□ 0.52
SOX2P48431 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC18.31■□□□□ 0.52
SOX2P48431 AC136469.2-201ENST00000623944 1028 ntBASIC18.31■□□□□ 0.52
SOX2P48431 NARF-205ENST00000412079 1760 ntTSL 5 BASIC18.31■□□□□ 0.52
SOX2P48431 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SOX2P48431 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SOX2P48431 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SOX2P48431 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
SOX2P48431 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
SOX2P48431 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC18.31■□□□□ 0.52
SOX2P48431 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SOX2P48431 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC18.31■□□□□ 0.52
SOX2P48431 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SOX2P48431 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
SOX2P48431 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.3■□□□□ 0.52
SOX2P48431 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.3■□□□□ 0.52
SOX2P48431 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC18.3■□□□□ 0.52
SOX2P48431 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC18.3■□□□□ 0.52
SOX2P48431 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC18.3■□□□□ 0.52
SOX2P48431 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SOX2P48431 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SOX2P48431 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC18.3■□□□□ 0.52
SOX2P48431 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SOX2P48431 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
SOX2P48431 GABARAPL3-202ENST00000624044 1851 ntBASIC18.3■□□□□ 0.52
SOX2P48431 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SOX2P48431 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.3■□□□□ 0.52
SOX2P48431 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
SOX2P48431 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SOX2P48431 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SOX2P48431 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SOX2P48431 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SOX2P48431 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SOX2P48431 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SOX2P48431 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SOX2P48431 AP005212.1-201ENST00000581547 1997 ntBASIC18.3■□□□□ 0.52
SOX2P48431 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
SOX2P48431 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
SOX2P48431 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
SOX2P48431 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SOX2P48431 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms