Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.99■□□□□ 0.95
CXCL12P48061 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.99■□□□□ 0.95
CXCL12P48061 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CXCL12P48061 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CXCL12P48061 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CXCL12P48061 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.98■□□□□ 0.95
CXCL12P48061 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CXCL12P48061 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CXCL12P48061 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC20.98■□□□□ 0.95
CXCL12P48061 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CXCL12P48061 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CXCL12P48061 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.98■□□□□ 0.95
CXCL12P48061 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.98■□□□□ 0.95
CXCL12P48061 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.98■□□□□ 0.95
CXCL12P48061 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CXCL12P48061 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.97■□□□□ 0.95
CXCL12P48061 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CXCL12P48061 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CXCL12P48061 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CXCL12P48061 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.97■□□□□ 0.95
CXCL12P48061 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.97■□□□□ 0.95
CXCL12P48061 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CXCL12P48061 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CXCL12P48061 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CXCL12P48061 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CXCL12P48061 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC20.97■□□□□ 0.95
CXCL12P48061 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
CXCL12P48061 RPS20-210ENST00000523936 899 ntTSL 2 BASIC20.97■□□□□ 0.95
CXCL12P48061 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
CXCL12P48061 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC20.97■□□□□ 0.95
CXCL12P48061 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CXCL12P48061 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
CXCL12P48061 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.97■□□□□ 0.95
CXCL12P48061 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.97■□□□□ 0.95
CXCL12P48061 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
CXCL12P48061 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.97■□□□□ 0.95
CXCL12P48061 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.96■□□□□ 0.95
CXCL12P48061 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CXCL12P48061 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CXCL12P48061 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CXCL12P48061 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CXCL12P48061 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CXCL12P48061 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CXCL12P48061 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CXCL12P48061 SLC29A4P2-201ENST00000504749 1089 ntBASIC20.96■□□□□ 0.95
CXCL12P48061 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CXCL12P48061 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.96■□□□□ 0.95
CXCL12P48061 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.96■□□□□ 0.95
CXCL12P48061 AC010331.1-201ENST00000611423 582 ntBASIC20.96■□□□□ 0.95
CXCL12P48061 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CXCL12P48061 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CXCL12P48061 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.96■□□□□ 0.95
CXCL12P48061 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CXCL12P48061 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CXCL12P48061 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
CXCL12P48061 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.96■□□□□ 0.95
CXCL12P48061 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CXCL12P48061 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CXCL12P48061 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CXCL12P48061 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CXCL12P48061 MDFI-202ENST00000373050 809 ntTSL 2 BASIC20.95■□□□□ 0.94
CXCL12P48061 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC20.95■□□□□ 0.94
CXCL12P48061 POM121L13P-201ENST00000422362 380 ntBASIC20.95■□□□□ 0.94
CXCL12P48061 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CXCL12P48061 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CXCL12P48061 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.95■□□□□ 0.94
CXCL12P48061 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.94■□□□□ 0.94
CXCL12P48061 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CXCL12P48061 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC20.94■□□□□ 0.94
CXCL12P48061 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.94■□□□□ 0.94
CXCL12P48061 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC20.94■□□□□ 0.94
CXCL12P48061 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CXCL12P48061 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CXCL12P48061 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.94■□□□□ 0.94
CXCL12P48061 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.94■□□□□ 0.94
CXCL12P48061 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CXCL12P48061 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CXCL12P48061 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CXCL12P48061 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
CXCL12P48061 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CXCL12P48061 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
CXCL12P48061 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
CXCL12P48061 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CXCL12P48061 ISG20-202ENST00000379224 540 ntTSL 3 BASIC20.93■□□□□ 0.94
CXCL12P48061 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CXCL12P48061 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
CXCL12P48061 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.93■□□□□ 0.94
CXCL12P48061 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
CXCL12P48061 KRT17P2-201ENST00000300992 1314 ntBASIC20.93■□□□□ 0.94
CXCL12P48061 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CXCL12P48061 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CXCL12P48061 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC20.93■□□□□ 0.94
CXCL12P48061 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CXCL12P48061 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
CXCL12P48061 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CXCL12P48061 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CXCL12P48061 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CXCL12P48061 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
CXCL12P48061 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
CXCL12P48061 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms