Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.89■□□□□ 0.93
PTPN4P29074 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PTPN4P29074 AL031602.1-201ENST00000633169 911 ntBASIC20.89■□□□□ 0.93
PTPN4P29074 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
PTPN4P29074 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.89■□□□□ 0.93
PTPN4P29074 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PTPN4P29074 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PTPN4P29074 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PTPN4P29074 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
PTPN4P29074 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
PTPN4P29074 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
PTPN4P29074 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.88■□□□□ 0.93
PTPN4P29074 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PTPN4P29074 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PTPN4P29074 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PTPN4P29074 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.88■□□□□ 0.93
PTPN4P29074 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
PTPN4P29074 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PTPN4P29074 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20.88■□□□□ 0.93
PTPN4P29074 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
PTPN4P29074 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.88■□□□□ 0.93
PTPN4P29074 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PTPN4P29074 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PTPN4P29074 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PTPN4P29074 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
PTPN4P29074 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PTPN4P29074 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PTPN4P29074 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.88■□□□□ 0.93
PTPN4P29074 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.88■□□□□ 0.93
PTPN4P29074 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PTPN4P29074 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PTPN4P29074 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.88■□□□□ 0.93
PTPN4P29074 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
PTPN4P29074 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PTPN4P29074 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.87■□□□□ 0.93
PTPN4P29074 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PTPN4P29074 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
PTPN4P29074 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PTPN4P29074 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.87■□□□□ 0.93
PTPN4P29074 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC20.87■□□□□ 0.93
PTPN4P29074 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
PTPN4P29074 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PTPN4P29074 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.87■□□□□ 0.93
PTPN4P29074 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC20.87■□□□□ 0.93
PTPN4P29074 MIR6084-201ENST00000622012 110 ntBASIC20.87■□□□□ 0.93
PTPN4P29074 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PTPN4P29074 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.87■□□□□ 0.93
PTPN4P29074 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
PTPN4P29074 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PTPN4P29074 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PTPN4P29074 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
PTPN4P29074 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PTPN4P29074 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PTPN4P29074 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.86■□□□□ 0.93
PTPN4P29074 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PTPN4P29074 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
PTPN4P29074 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
PTPN4P29074 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PTPN4P29074 KRT18P5-201ENST00000436075 1291 ntBASIC20.86■□□□□ 0.93
PTPN4P29074 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.86■□□□□ 0.93
PTPN4P29074 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PTPN4P29074 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PTPN4P29074 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PTPN4P29074 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.86■□□□□ 0.93
PTPN4P29074 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.86■□□□□ 0.93
PTPN4P29074 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PTPN4P29074 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PTPN4P29074 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.86■□□□□ 0.93
PTPN4P29074 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC20.86■□□□□ 0.93
PTPN4P29074 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.86■□□□□ 0.93
PTPN4P29074 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTPN4P29074 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.85■□□□□ 0.93
PTPN4P29074 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.85■□□□□ 0.93
PTPN4P29074 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.85■□□□□ 0.93
PTPN4P29074 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTPN4P29074 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTPN4P29074 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.85■□□□□ 0.93
PTPN4P29074 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.85■□□□□ 0.93
PTPN4P29074 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.85■□□□□ 0.93
PTPN4P29074 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PTPN4P29074 AP005435.1-201ENST00000529293 1178 ntBASIC20.85■□□□□ 0.93
PTPN4P29074 DUX4L2-201ENST00000561772 1275 ntBASIC20.85■□□□□ 0.93
PTPN4P29074 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.85■□□□□ 0.93
PTPN4P29074 DUX4L6-201ENST00000626483 1275 ntBASIC20.85■□□□□ 0.93
PTPN4P29074 DUX4L1-201ENST00000627662 1275 ntBASIC20.85■□□□□ 0.93
PTPN4P29074 DUX4L8-201ENST00000629013 1275 ntBASIC20.85■□□□□ 0.93
PTPN4P29074 DUX4L3-201ENST00000630187 1275 ntBASIC20.85■□□□□ 0.93
PTPN4P29074 DUX4L7-201ENST00000630678 1275 ntBASIC20.85■□□□□ 0.93
PTPN4P29074 DUX4L5-201ENST00000630834 1275 ntBASIC20.85■□□□□ 0.93
PTPN4P29074 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC20.85■□□□□ 0.93
PTPN4P29074 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20.85■□□□□ 0.93
PTPN4P29074 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTPN4P29074 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTPN4P29074 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTPN4P29074 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.84■□□□□ 0.93
PTPN4P29074 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PTPN4P29074 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PTPN4P29074 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.84■□□□□ 0.93
PTPN4P29074 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC20.84■□□□□ 0.93
PTPN4P29074 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms