Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VIMP08670 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VIMP08670 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
VIMP08670 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
VIMP08670 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
VIMP08670 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VIMP08670 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VIMP08670 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VIMP08670 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VIMP08670 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VIMP08670 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
VIMP08670 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
VIMP08670 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VIMP08670 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
VIMP08670 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.94■□□□□ 0.94
VIMP08670 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.94■□□□□ 0.94
VIMP08670 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VIMP08670 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VIMP08670 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VIMP08670 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.94■□□□□ 0.94
VIMP08670 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.94■□□□□ 0.94
VIMP08670 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.94■□□□□ 0.94
VIMP08670 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
VIMP08670 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
VIMP08670 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC20.94■□□□□ 0.94
VIMP08670 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VIMP08670 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VIMP08670 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
VIMP08670 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
VIMP08670 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VIMP08670 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
VIMP08670 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VIMP08670 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VIMP08670 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VIMP08670 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VIMP08670 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VIMP08670 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC20.93■□□□□ 0.94
VIMP08670 BEX3-202ENST00000372634 753 ntTSL 2 BASIC20.93■□□□□ 0.94
VIMP08670 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VIMP08670 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VIMP08670 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.93■□□□□ 0.94
VIMP08670 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VIMP08670 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VIMP08670 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
VIMP08670 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
VIMP08670 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VIMP08670 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
VIMP08670 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
VIMP08670 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VIMP08670 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
VIMP08670 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VIMP08670 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VIMP08670 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VIMP08670 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
VIMP08670 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
VIMP08670 AL499627.2-201ENST00000606283 725 ntBASIC20.92■□□□□ 0.94
VIMP08670 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
VIMP08670 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VIMP08670 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.92■□□□□ 0.94
VIMP08670 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
VIMP08670 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VIMP08670 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
VIMP08670 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VIMP08670 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.92■□□□□ 0.94
VIMP08670 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
VIMP08670 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
VIMP08670 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.92■□□□□ 0.94
VIMP08670 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VIMP08670 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VIMP08670 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
VIMP08670 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VIMP08670 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VIMP08670 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VIMP08670 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VIMP08670 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VIMP08670 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
VIMP08670 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.91■□□□□ 0.94
VIMP08670 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.91■□□□□ 0.94
VIMP08670 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
VIMP08670 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.91■□□□□ 0.94
VIMP08670 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
VIMP08670 AC020907.5-201ENST00000624372 1936 ntBASIC20.91■□□□□ 0.94
VIMP08670 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
VIMP08670 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.9■□□□□ 0.94
VIMP08670 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
VIMP08670 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
VIMP08670 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.9■□□□□ 0.94
VIMP08670 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VIMP08670 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
VIMP08670 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
VIMP08670 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
VIMP08670 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VIMP08670 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
VIMP08670 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VIMP08670 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.9■□□□□ 0.94
VIMP08670 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.9■□□□□ 0.94
VIMP08670 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
VIMP08670 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VIMP08670 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC20.9■□□□□ 0.94
VIMP08670 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms