Protein–RNA interactions for Protein: O60481

ZIC3, Zinc finger protein ZIC 3, humanhuman

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC3O60481 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC18.9■□□□□ 0.62
ZIC3O60481 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZIC3O60481 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC18.9■□□□□ 0.62
ZIC3O60481 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZIC3O60481 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZIC3O60481 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZIC3O60481 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
ZIC3O60481 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
ZIC3O60481 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
ZIC3O60481 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
ZIC3O60481 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
ZIC3O60481 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
ZIC3O60481 Z98882.1-201ENST00000622160 2253 ntBASIC18.89■□□□□ 0.61
ZIC3O60481 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
ZIC3O60481 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
ZIC3O60481 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
ZIC3O60481 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
ZIC3O60481 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
ZIC3O60481 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC18.89■□□□□ 0.61
ZIC3O60481 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC18.89■□□□□ 0.61
ZIC3O60481 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC18.89■□□□□ 0.61
ZIC3O60481 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
ZIC3O60481 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC18.89■□□□□ 0.61
ZIC3O60481 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC18.89■□□□□ 0.61
ZIC3O60481 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC18.89■□□□□ 0.61
ZIC3O60481 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
ZIC3O60481 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
ZIC3O60481 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC18.89■□□□□ 0.61
ZIC3O60481 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
ZIC3O60481 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC18.89■□□□□ 0.61
ZIC3O60481 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC18.89■□□□□ 0.61
ZIC3O60481 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
ZIC3O60481 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
ZIC3O60481 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
ZIC3O60481 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC18.89■□□□□ 0.61
ZIC3O60481 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
ZIC3O60481 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC18.88■□□□□ 0.61
ZIC3O60481 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC18.88■□□□□ 0.61
ZIC3O60481 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ZIC3O60481 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
ZIC3O60481 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ZIC3O60481 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC18.88■□□□□ 0.61
ZIC3O60481 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ZIC3O60481 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ZIC3O60481 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC18.88■□□□□ 0.61
ZIC3O60481 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ZIC3O60481 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ZIC3O60481 AC007322.4-201ENST00000509611 723 ntBASIC18.88■□□□□ 0.61
ZIC3O60481 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ZIC3O60481 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
ZIC3O60481 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
ZIC3O60481 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC18.88■□□□□ 0.61
ZIC3O60481 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC18.88■□□□□ 0.61
ZIC3O60481 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC18.88■□□□□ 0.61
ZIC3O60481 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ZIC3O60481 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC18.88■□□□□ 0.61
ZIC3O60481 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ZIC3O60481 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
ZIC3O60481 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC18.87■□□□□ 0.61
ZIC3O60481 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
ZIC3O60481 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
ZIC3O60481 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC18.87■□□□□ 0.61
ZIC3O60481 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC18.87■□□□□ 0.61
ZIC3O60481 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
ZIC3O60481 PPP1R14BP3-201ENST00000509033 445 ntBASIC18.87■□□□□ 0.61
ZIC3O60481 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC18.87■□□□□ 0.61
ZIC3O60481 TK2-208ENST00000545043 1120 ntTSL 2 BASIC18.87■□□□□ 0.61
ZIC3O60481 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ZIC3O60481 AC068338.2-201ENST00000563278 1430 ntBASIC18.87■□□□□ 0.61
ZIC3O60481 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
ZIC3O60481 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
ZIC3O60481 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ZIC3O60481 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZIC3O60481 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZIC3O60481 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZIC3O60481 AC245052.3-201ENST00000450182 901 ntBASIC18.86■□□□□ 0.61
ZIC3O60481 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZIC3O60481 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
ZIC3O60481 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC18.86■□□□□ 0.61
ZIC3O60481 PLLP-204ENST00000569059 665 ntTSL 3 BASIC18.86■□□□□ 0.61
ZIC3O60481 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZIC3O60481 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
ZIC3O60481 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZIC3O60481 WWC2-AS2-201ENST00000578387 2183 ntBASIC18.86■□□□□ 0.61
ZIC3O60481 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC18.86■□□□□ 0.61
ZIC3O60481 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC18.86■□□□□ 0.61
ZIC3O60481 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
ZIC3O60481 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ZIC3O60481 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ZIC3O60481 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ZIC3O60481 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
ZIC3O60481 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ZIC3O60481 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.85■□□□□ 0.61
ZIC3O60481 MAP2K4P1-201ENST00000438453 1195 ntBASIC18.85■□□□□ 0.61
ZIC3O60481 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ZIC3O60481 AC005181.1-201ENST00000604782 1256 ntBASIC18.85■□□□□ 0.61
ZIC3O60481 AL050303.2-201ENST00000619798 666 ntBASIC18.85■□□□□ 0.61
ZIC3O60481 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC18.85■□□□□ 0.61
ZIC3O60481 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
ZIC3O60481 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms