Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SDCBPO00560 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC17.72■□□□□ 0.43
SDCBPO00560 PBX2P1-201ENST00000493219 1291 ntBASIC17.72■□□□□ 0.43
SDCBPO00560 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC17.72■□□□□ 0.43
SDCBPO00560 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC17.72■□□□□ 0.43
SDCBPO00560 AC126544.1-201ENST00000580842 1059 ntBASIC17.72■□□□□ 0.43
SDCBPO00560 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
SDCBPO00560 PALM-207ENST00000590161 2137 ntTSL 4 BASIC17.72■□□□□ 0.43
SDCBPO00560 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SDCBPO00560 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SDCBPO00560 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SDCBPO00560 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC17.71■□□□□ 0.43
SDCBPO00560 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SDCBPO00560 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SDCBPO00560 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SDCBPO00560 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SDCBPO00560 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SDCBPO00560 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SDCBPO00560 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
SDCBPO00560 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SDCBPO00560 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SDCBPO00560 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SDCBPO00560 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SDCBPO00560 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC17.71■□□□□ 0.43
SDCBPO00560 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
SDCBPO00560 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC17.71■□□□□ 0.43
SDCBPO00560 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC17.71■□□□□ 0.43
SDCBPO00560 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC17.71■□□□□ 0.43
SDCBPO00560 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC17.71■□□□□ 0.43
SDCBPO00560 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SDCBPO00560 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
SDCBPO00560 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SDCBPO00560 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC17.71■□□□□ 0.43
SDCBPO00560 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SDCBPO00560 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SDCBPO00560 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SDCBPO00560 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC17.71■□□□□ 0.42
SDCBPO00560 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.42
SDCBPO00560 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
SDCBPO00560 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
SDCBPO00560 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SDCBPO00560 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SDCBPO00560 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SDCBPO00560 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
SDCBPO00560 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SDCBPO00560 ME2-216ENST00000639850 2331 ntTSL 5 BASIC17.7■□□□□ 0.42
SDCBPO00560 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SDCBPO00560 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
SDCBPO00560 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SDCBPO00560 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SDCBPO00560 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SDCBPO00560 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SDCBPO00560 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SDCBPO00560 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC17.7■□□□□ 0.42
SDCBPO00560 AL034346.1-201ENST00000568244 1277 ntBASIC17.7■□□□□ 0.42
SDCBPO00560 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
SDCBPO00560 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC17.7■□□□□ 0.42
SDCBPO00560 AC008764.7-201ENST00000593779 1081 ntBASIC17.7■□□□□ 0.42
SDCBPO00560 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SDCBPO00560 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
SDCBPO00560 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SDCBPO00560 PCDHAC2-203ENST00000615316 3011 ntBASIC17.7■□□□□ 0.42
SDCBPO00560 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SDCBPO00560 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
SDCBPO00560 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
SDCBPO00560 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
SDCBPO00560 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SDCBPO00560 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SDCBPO00560 AL391422.3-201ENST00000603791 2761 ntBASIC17.69■□□□□ 0.42
SDCBPO00560 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SDCBPO00560 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SDCBPO00560 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SDCBPO00560 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SDCBPO00560 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC17.69■□□□□ 0.42
SDCBPO00560 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC17.69■□□□□ 0.42
SDCBPO00560 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC17.69■□□□□ 0.42
SDCBPO00560 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC17.69■□□□□ 0.42
SDCBPO00560 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SDCBPO00560 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC17.69■□□□□ 0.42
SDCBPO00560 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
SDCBPO00560 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SDCBPO00560 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SDCBPO00560 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC17.69■□□□□ 0.42
SDCBPO00560 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC17.69■□□□□ 0.42
SDCBPO00560 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
SDCBPO00560 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SDCBPO00560 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SDCBPO00560 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SDCBPO00560 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SDCBPO00560 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC17.68■□□□□ 0.42
SDCBPO00560 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC17.68■□□□□ 0.42
SDCBPO00560 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SDCBPO00560 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SDCBPO00560 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SDCBPO00560 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SDCBPO00560 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SDCBPO00560 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SDCBPO00560 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SDCBPO00560 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC17.68■□□□□ 0.42
SDCBPO00560 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms