Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC20.05■□□□□ 0.8
CACNA1AO00555 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.05■□□□□ 0.8
CACNA1AO00555 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC20.05■□□□□ 0.8
CACNA1AO00555 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.05■□□□□ 0.8
CACNA1AO00555 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CACNA1AO00555 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.04■□□□□ 0.8
CACNA1AO00555 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CACNA1AO00555 AL355355.2-201ENST00000442321 338 ntBASIC20.04■□□□□ 0.8
CACNA1AO00555 BX664615.1-201ENST00000443558 458 ntBASIC20.04■□□□□ 0.8
CACNA1AO00555 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC20.04■□□□□ 0.8
CACNA1AO00555 AC006011.2-201ENST00000621313 1158 ntBASIC20.04■□□□□ 0.8
CACNA1AO00555 AC010947.1-201ENST00000623454 693 ntBASIC20.04■□□□□ 0.8
CACNA1AO00555 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CACNA1AO00555 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.04■□□□□ 0.8
CACNA1AO00555 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CACNA1AO00555 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC20.04■□□□□ 0.8
CACNA1AO00555 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC20.04■□□□□ 0.8
CACNA1AO00555 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20.04■□□□□ 0.8
CACNA1AO00555 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC20.04■□□□□ 0.8
CACNA1AO00555 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.04■□□□□ 0.8
CACNA1AO00555 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.04■□□□□ 0.8
CACNA1AO00555 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.04■□□□□ 0.8
CACNA1AO00555 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.04■□□□□ 0.8
CACNA1AO00555 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CACNA1AO00555 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CACNA1AO00555 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.03■□□□□ 0.8
CACNA1AO00555 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CACNA1AO00555 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC20.03■□□□□ 0.8
CACNA1AO00555 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CACNA1AO00555 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CACNA1AO00555 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC20.03■□□□□ 0.8
CACNA1AO00555 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
CACNA1AO00555 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.03■□□□□ 0.8
CACNA1AO00555 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CACNA1AO00555 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CACNA1AO00555 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CACNA1AO00555 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CACNA1AO00555 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CACNA1AO00555 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CACNA1AO00555 AF186192.3-201ENST00000583427 947 ntBASIC20.03■□□□□ 0.8
CACNA1AO00555 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
CACNA1AO00555 LINC02084-201ENST00000606069 1096 ntBASIC20.03■□□□□ 0.8
CACNA1AO00555 AP000550.4-202ENST00000639755 178 ntBASIC20.03■□□□□ 0.8
CACNA1AO00555 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.02■□□□□ 0.8
CACNA1AO00555 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CACNA1AO00555 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CACNA1AO00555 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CACNA1AO00555 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC20.02■□□□□ 0.8
CACNA1AO00555 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
CACNA1AO00555 AC079598.2-202ENST00000546624 1451 ntBASIC20.02■□□□□ 0.79
CACNA1AO00555 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CACNA1AO00555 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
CACNA1AO00555 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CACNA1AO00555 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC20.02■□□□□ 0.79
CACNA1AO00555 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.02■□□□□ 0.79
CACNA1AO00555 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.01■□□□□ 0.79
CACNA1AO00555 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CACNA1AO00555 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
CACNA1AO00555 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC20.01■□□□□ 0.79
CACNA1AO00555 KRASP1-201ENST00000407852 552 ntBASIC20.01■□□□□ 0.79
CACNA1AO00555 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC20.01■□□□□ 0.79
CACNA1AO00555 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CACNA1AO00555 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CACNA1AO00555 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CACNA1AO00555 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CACNA1AO00555 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CACNA1AO00555 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CACNA1AO00555 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.01■□□□□ 0.79
CACNA1AO00555 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CACNA1AO00555 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CACNA1AO00555 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CACNA1AO00555 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CACNA1AO00555 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CACNA1AO00555 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CACNA1AO00555 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC20.01■□□□□ 0.79
CACNA1AO00555 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC20.01■□□□□ 0.79
CACNA1AO00555 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.01■□□□□ 0.79
CACNA1AO00555 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20■□□□□ 0.79
CACNA1AO00555 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CACNA1AO00555 CYP2D8P-201ENST00000433633 1490 ntBASIC20■□□□□ 0.79
CACNA1AO00555 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
CACNA1AO00555 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC20■□□□□ 0.79
CACNA1AO00555 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20■□□□□ 0.79
CACNA1AO00555 AC145676.1-201ENST00000514988 2004 ntBASIC20■□□□□ 0.79
CACNA1AO00555 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC20■□□□□ 0.79
CACNA1AO00555 AC087633.2-202ENST00000565166 1439 ntBASIC20■□□□□ 0.79
CACNA1AO00555 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20■□□□□ 0.79
CACNA1AO00555 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CACNA1AO00555 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC20■□□□□ 0.79
CACNA1AO00555 CLEC4GP1-201ENST00000596555 870 ntBASIC20■□□□□ 0.79
CACNA1AO00555 AP000525.1-201ENST00000608286 694 ntBASIC20■□□□□ 0.79
CACNA1AO00555 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CACNA1AO00555 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC19.99■□□□□ 0.79
CACNA1AO00555 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CACNA1AO00555 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CACNA1AO00555 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC19.99■□□□□ 0.79
CACNA1AO00555 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC19.99■□□□□ 0.79
CACNA1AO00555 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CACNA1AO00555 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC19.99■□□□□ 0.79
CACNA1AO00555 PP7080-204ENST00000510714 601 ntTSL 3 BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms