Protein–RNA interactions for Protein: E9PGA6

C1QTNF3-AMACR, C1QTNF3-AMACR readthrough (NMD candidate), humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C1QTNF3-AMACRE9PGA6 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 GOLGA2P6-201ENST00000340929 2049 ntBASIC21■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 MIPEPP3-201ENST00000412105 444 ntBASIC20.99■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 AC073210.2-201ENST00000430369 194 ntBASIC20.99■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.99■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC20.99■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.99■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.99■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.99■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.99■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC20.98■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC20.98■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 AC091799.1-201ENST00000422823 811 ntBASIC20.98■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.98■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 MARS-234ENST00000630571 216 ntTSL 5 BASIC20.98■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 MARS-235ENST00000630803 183 ntTSL 3 BASIC20.98■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.98■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC20.97■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.97■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.97■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.97■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.97■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.96■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.96■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 CD99P1-205ENST00000527459 561 ntBASIC20.96■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC20.96■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 FAM21FP-204ENST00000608637 956 ntBASIC20.96■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.96■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 AC010980.2-201ENST00000587099 1412 ntBASIC20.95■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.95■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.95■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 BX276092.2-201ENST00000417668 665 ntBASIC20.95■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 KRT18P6-201ENST00000555540 1265 ntBASIC20.95■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 KLF13-207ENST00000560473 489 ntTSL 3 BASIC20.95■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 AC092118.2-201ENST00000613495 667 ntBASIC20.95■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.95■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.95■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.95■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.94■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.94■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms