Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
LRRC53A6NM62 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
LRRC53A6NM62 MIR939-201ENST00000401314 82 ntBASIC22.54■■□□□ 1.2
LRRC53A6NM62 AF213884.3-201ENST00000563833 479 ntBASIC22.54■■□□□ 1.2
LRRC53A6NM62 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC22.54■■□□□ 1.2
LRRC53A6NM62 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC22.54■■□□□ 1.2
LRRC53A6NM62 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
LRRC53A6NM62 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
LRRC53A6NM62 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
LRRC53A6NM62 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC22.53■■□□□ 1.2
LRRC53A6NM62 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
LRRC53A6NM62 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC22.53■■□□□ 1.2
LRRC53A6NM62 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
LRRC53A6NM62 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
LRRC53A6NM62 RASA4CP-201ENST00000424092 1398 ntBASIC22.53■■□□□ 1.2
LRRC53A6NM62 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC22.53■■□□□ 1.2
LRRC53A6NM62 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
LRRC53A6NM62 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
LRRC53A6NM62 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
LRRC53A6NM62 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC22.53■■□□□ 1.2
LRRC53A6NM62 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC22.53■■□□□ 1.2
LRRC53A6NM62 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC22.53■■□□□ 1.2
LRRC53A6NM62 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
LRRC53A6NM62 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC22.53■■□□□ 1.2
LRRC53A6NM62 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC22.53■■□□□ 1.2
LRRC53A6NM62 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC22.53■■□□□ 1.2
LRRC53A6NM62 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC22.53■■□□□ 1.2
LRRC53A6NM62 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC22.53■■□□□ 1.2
LRRC53A6NM62 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC22.53■■□□□ 1.2
LRRC53A6NM62 AC073314.1-201ENST00000568729 2216 ntBASIC22.53■■□□□ 1.2
LRRC53A6NM62 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
LRRC53A6NM62 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
LRRC53A6NM62 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
LRRC53A6NM62 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC22.52■■□□□ 1.2
LRRC53A6NM62 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
LRRC53A6NM62 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC22.52■■□□□ 1.2
LRRC53A6NM62 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
LRRC53A6NM62 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
LRRC53A6NM62 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
LRRC53A6NM62 AC121338.2-201ENST00000622535 1744 ntBASIC22.52■■□□□ 1.2
LRRC53A6NM62 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
LRRC53A6NM62 RNF146-206ENST00000480444 843 ntTSL 2 BASIC22.52■■□□□ 1.2
LRRC53A6NM62 AL355001.2-201ENST00000620617 1191 ntBASIC22.52■■□□□ 1.2
LRRC53A6NM62 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
LRRC53A6NM62 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC22.52■■□□□ 1.2
LRRC53A6NM62 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
LRRC53A6NM62 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
LRRC53A6NM62 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
LRRC53A6NM62 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
LRRC53A6NM62 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.19
LRRC53A6NM62 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.19
LRRC53A6NM62 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
LRRC53A6NM62 AP005212.1-201ENST00000581547 1997 ntBASIC22.51■■□□□ 1.19
LRRC53A6NM62 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
LRRC53A6NM62 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
LRRC53A6NM62 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
LRRC53A6NM62 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
LRRC53A6NM62 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC22.51■■□□□ 1.19
LRRC53A6NM62 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC22.51■■□□□ 1.19
LRRC53A6NM62 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC22.51■■□□□ 1.19
LRRC53A6NM62 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC22.51■■□□□ 1.19
LRRC53A6NM62 AL031432.3-201ENST00000607698 485 ntBASIC22.51■■□□□ 1.19
LRRC53A6NM62 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
LRRC53A6NM62 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC22.51■■□□□ 1.19
LRRC53A6NM62 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC22.51■■□□□ 1.19
LRRC53A6NM62 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
LRRC53A6NM62 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
LRRC53A6NM62 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
LRRC53A6NM62 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
LRRC53A6NM62 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC22.5■■□□□ 1.19
LRRC53A6NM62 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
LRRC53A6NM62 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
LRRC53A6NM62 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
LRRC53A6NM62 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC22.5■■□□□ 1.19
LRRC53A6NM62 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
LRRC53A6NM62 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
LRRC53A6NM62 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC22.5■■□□□ 1.19
LRRC53A6NM62 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC22.5■■□□□ 1.19
LRRC53A6NM62 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC22.5■■□□□ 1.19
LRRC53A6NM62 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC22.5■■□□□ 1.19
LRRC53A6NM62 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC22.5■■□□□ 1.19
LRRC53A6NM62 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC22.5■■□□□ 1.19
LRRC53A6NM62 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC22.5■■□□□ 1.19
LRRC53A6NM62 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
LRRC53A6NM62 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
LRRC53A6NM62 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
LRRC53A6NM62 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC22.5■■□□□ 1.19
LRRC53A6NM62 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC22.49■■□□□ 1.19
LRRC53A6NM62 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
LRRC53A6NM62 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC22.49■■□□□ 1.19
LRRC53A6NM62 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC22.49■■□□□ 1.19
LRRC53A6NM62 AC091305.1-201ENST00000479476 895 ntBASIC22.49■■□□□ 1.19
LRRC53A6NM62 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC22.49■■□□□ 1.19
LRRC53A6NM62 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC22.49■■□□□ 1.19
LRRC53A6NM62 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
LRRC53A6NM62 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
LRRC53A6NM62 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
LRRC53A6NM62 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
LRRC53A6NM62 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
LRRC53A6NM62 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms