Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV40A0A0B4J280 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV40A0A0B4J280 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TRAV40A0A0B4J280 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TRAV40A0A0B4J280 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRAV40A0A0B4J280 AC242852.2-201ENST00000615738 1807 ntBASIC17.05■□□□□ 0.32
TRAV40A0A0B4J280 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
TRAV40A0A0B4J280 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
TRAV40A0A0B4J280 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRAV40A0A0B4J280 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
TRAV40A0A0B4J280 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC17.05■□□□□ 0.32
TRAV40A0A0B4J280 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TRAV40A0A0B4J280 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
TRAV40A0A0B4J280 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
TRAV40A0A0B4J280 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC17.05■□□□□ 0.32
TRAV40A0A0B4J280 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
TRAV40A0A0B4J280 AC133041.1-202ENST00000642053 222 ntBASIC17.05■□□□□ 0.32
TRAV40A0A0B4J280 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRAV40A0A0B4J280 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
TRAV40A0A0B4J280 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRAV40A0A0B4J280 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TRAV40A0A0B4J280 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TRAV40A0A0B4J280 AC233723.2-201ENST00000623798 2106 ntBASIC17.05■□□□□ 0.32
TRAV40A0A0B4J280 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRAV40A0A0B4J280 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC17.04■□□□□ 0.32
TRAV40A0A0B4J280 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC17.04■□□□□ 0.32
TRAV40A0A0B4J280 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
TRAV40A0A0B4J280 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRAV40A0A0B4J280 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRAV40A0A0B4J280 AC245052.3-201ENST00000450182 901 ntBASIC17.04■□□□□ 0.32
TRAV40A0A0B4J280 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TRAV40A0A0B4J280 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC17.04■□□□□ 0.32
TRAV40A0A0B4J280 KRT18P6-201ENST00000555540 1265 ntBASIC17.04■□□□□ 0.32
TRAV40A0A0B4J280 KLF13-207ENST00000560473 489 ntTSL 3 BASIC17.04■□□□□ 0.32
TRAV40A0A0B4J280 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TRAV40A0A0B4J280 AL591742.1-201ENST00000604433 565 ntBASIC17.04■□□□□ 0.32
TRAV40A0A0B4J280 AC243732.1-201ENST00000612648 864 ntBASIC17.04■□□□□ 0.32
TRAV40A0A0B4J280 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC17.04■□□□□ 0.32
TRAV40A0A0B4J280 C11orf96-202ENST00000528572 1834 ntBASIC17.04■□□□□ 0.32
TRAV40A0A0B4J280 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TRAV40A0A0B4J280 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC17.04■□□□□ 0.32
TRAV40A0A0B4J280 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRAV40A0A0B4J280 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TRAV40A0A0B4J280 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC17.04■□□□□ 0.32
TRAV40A0A0B4J280 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRAV40A0A0B4J280 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRAV40A0A0B4J280 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRAV40A0A0B4J280 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
TRAV40A0A0B4J280 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TRAV40A0A0B4J280 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
TRAV40A0A0B4J280 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRAV40A0A0B4J280 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRAV40A0A0B4J280 GUSBP5-202ENST00000510805 1989 ntBASIC17.03■□□□□ 0.32
TRAV40A0A0B4J280 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRAV40A0A0B4J280 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC17.03■□□□□ 0.32
TRAV40A0A0B4J280 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRAV40A0A0B4J280 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TRAV40A0A0B4J280 MIR4758-201ENST00000577688 71 ntBASIC17.03■□□□□ 0.32
TRAV40A0A0B4J280 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
TRAV40A0A0B4J280 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC17.03■□□□□ 0.32
TRAV40A0A0B4J280 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRAV40A0A0B4J280 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC17.03■□□□□ 0.32
TRAV40A0A0B4J280 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRAV40A0A0B4J280 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRAV40A0A0B4J280 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRAV40A0A0B4J280 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRAV40A0A0B4J280 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRAV40A0A0B4J280 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRAV40A0A0B4J280 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRAV40A0A0B4J280 ABHD17AP1-201ENST00000358206 933 ntBASIC17.02■□□□□ 0.32
TRAV40A0A0B4J280 MIPEPP3-201ENST00000412105 444 ntBASIC17.02■□□□□ 0.32
TRAV40A0A0B4J280 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC17.02■□□□□ 0.32
TRAV40A0A0B4J280 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRAV40A0A0B4J280 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC17.02■□□□□ 0.31
TRAV40A0A0B4J280 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
TRAV40A0A0B4J280 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
TRAV40A0A0B4J280 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV40A0A0B4J280 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV40A0A0B4J280 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV40A0A0B4J280 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV40A0A0B4J280 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC17.01■□□□□ 0.31
TRAV40A0A0B4J280 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV40A0A0B4J280 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV40A0A0B4J280 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV40A0A0B4J280 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
TRAV40A0A0B4J280 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV40A0A0B4J280 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC17.01■□□□□ 0.31
TRAV40A0A0B4J280 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC17.01■□□□□ 0.31
TRAV40A0A0B4J280 ISCU-212ENST00000547005 795 ntTSL 3 BASIC17.01■□□□□ 0.31
TRAV40A0A0B4J280 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV40A0A0B4J280 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC17.01■□□□□ 0.31
TRAV40A0A0B4J280 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV40A0A0B4J280 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV40A0A0B4J280 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
TRAV40A0A0B4J280 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV40A0A0B4J280 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV40A0A0B4J280 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
TRAV40A0A0B4J280 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC17.01■□□□□ 0.31
TRAV40A0A0B4J280 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV40A0A0B4J280 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms