Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PCDHA1Q9Y5I3 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC24.09■■□□□ 1.45
PCDHA1Q9Y5I3 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC24.09■■□□□ 1.45
PCDHA1Q9Y5I3 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PCDHA1Q9Y5I3 APTR-203ENST00000430801 583 ntTSL 5 BASIC24.09■■□□□ 1.45
PCDHA1Q9Y5I3 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC24.09■■□□□ 1.45
PCDHA1Q9Y5I3 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
PCDHA1Q9Y5I3 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC24.09■■□□□ 1.45
PCDHA1Q9Y5I3 AC243732.1-201ENST00000612648 864 ntBASIC24.09■■□□□ 1.45
PCDHA1Q9Y5I3 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PCDHA1Q9Y5I3 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC24.09■■□□□ 1.45
PCDHA1Q9Y5I3 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PCDHA1Q9Y5I3 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PCDHA1Q9Y5I3 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
PCDHA1Q9Y5I3 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
PCDHA1Q9Y5I3 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
PCDHA1Q9Y5I3 GPX1P1-201ENST00000388829 606 ntBASIC24.08■■□□□ 1.45
PCDHA1Q9Y5I3 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC24.08■■□□□ 1.45
PCDHA1Q9Y5I3 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC24.08■■□□□ 1.45
PCDHA1Q9Y5I3 PLLP-204ENST00000569059 665 ntTSL 3 BASIC24.08■■□□□ 1.45
PCDHA1Q9Y5I3 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
PCDHA1Q9Y5I3 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC24.08■■□□□ 1.45
PCDHA1Q9Y5I3 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
PCDHA1Q9Y5I3 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
PCDHA1Q9Y5I3 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC24.07■■□□□ 1.44
PCDHA1Q9Y5I3 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
PCDHA1Q9Y5I3 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC24.07■■□□□ 1.44
PCDHA1Q9Y5I3 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC24.07■■□□□ 1.44
PCDHA1Q9Y5I3 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
PCDHA1Q9Y5I3 AC083906.2-201ENST00000511578 360 ntBASIC24.07■■□□□ 1.44
PCDHA1Q9Y5I3 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC24.07■■□□□ 1.44
PCDHA1Q9Y5I3 AC104771.1-201ENST00000603335 964 ntBASIC24.07■■□□□ 1.44
PCDHA1Q9Y5I3 AL121832.2-201ENST00000610979 668 ntBASIC24.07■■□□□ 1.44
PCDHA1Q9Y5I3 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC24.07■■□□□ 1.44
PCDHA1Q9Y5I3 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC24.07■■□□□ 1.44
PCDHA1Q9Y5I3 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC24.07■■□□□ 1.44
PCDHA1Q9Y5I3 STK25-234ENST00000535007 2459 ntTSL 2 BASIC24.07■■□□□ 1.44
PCDHA1Q9Y5I3 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
PCDHA1Q9Y5I3 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC24.07■■□□□ 1.44
PCDHA1Q9Y5I3 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
PCDHA1Q9Y5I3 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
PCDHA1Q9Y5I3 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
PCDHA1Q9Y5I3 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC24.06■■□□□ 1.44
PCDHA1Q9Y5I3 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC24.06■■□□□ 1.44
PCDHA1Q9Y5I3 AL109923.1-201ENST00000618799 583 ntBASIC24.06■■□□□ 1.44
PCDHA1Q9Y5I3 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
PCDHA1Q9Y5I3 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
PCDHA1Q9Y5I3 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC24.06■■□□□ 1.44
PCDHA1Q9Y5I3 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC24.06■■□□□ 1.44
PCDHA1Q9Y5I3 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
PCDHA1Q9Y5I3 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
PCDHA1Q9Y5I3 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC24.05■■□□□ 1.44
PCDHA1Q9Y5I3 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC24.05■■□□□ 1.44
PCDHA1Q9Y5I3 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC24.05■■□□□ 1.44
PCDHA1Q9Y5I3 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
PCDHA1Q9Y5I3 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
PCDHA1Q9Y5I3 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
PCDHA1Q9Y5I3 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
PCDHA1Q9Y5I3 FBXW4P1-201ENST00000426721 2239 ntBASIC24.04■■□□□ 1.44
PCDHA1Q9Y5I3 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PCDHA1Q9Y5I3 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
PCDHA1Q9Y5I3 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PCDHA1Q9Y5I3 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PCDHA1Q9Y5I3 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PCDHA1Q9Y5I3 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
PCDHA1Q9Y5I3 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC24.04■■□□□ 1.44
PCDHA1Q9Y5I3 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PCDHA1Q9Y5I3 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PCDHA1Q9Y5I3 METTL15-202ENST00000403099 795 ntTSL 5 BASIC24.04■■□□□ 1.44
PCDHA1Q9Y5I3 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC24.04■■□□□ 1.44
PCDHA1Q9Y5I3 AC133552.2-202ENST00000575694 574 ntBASIC24.04■■□□□ 1.44
PCDHA1Q9Y5I3 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PCDHA1Q9Y5I3 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PCDHA1Q9Y5I3 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC24.04■■□□□ 1.44
PCDHA1Q9Y5I3 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
PCDHA1Q9Y5I3 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
PCDHA1Q9Y5I3 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC24.03■■□□□ 1.44
PCDHA1Q9Y5I3 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC24.03■■□□□ 1.44
PCDHA1Q9Y5I3 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC24.03■■□□□ 1.44
PCDHA1Q9Y5I3 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC24.03■■□□□ 1.44
PCDHA1Q9Y5I3 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC24.03■■□□□ 1.44
PCDHA1Q9Y5I3 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC24.03■■□□□ 1.44
PCDHA1Q9Y5I3 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
PCDHA1Q9Y5I3 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC24.03■■□□□ 1.44
PCDHA1Q9Y5I3 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC24.03■■□□□ 1.44
PCDHA1Q9Y5I3 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC24.03■■□□□ 1.44
PCDHA1Q9Y5I3 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
PCDHA1Q9Y5I3 CYP2T1P-201ENST00000432607 1285 ntBASIC24.03■■□□□ 1.44
PCDHA1Q9Y5I3 AC245052.3-201ENST00000450182 901 ntBASIC24.03■■□□□ 1.44
PCDHA1Q9Y5I3 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
PCDHA1Q9Y5I3 OAS3-207ENST00000551007 998 ntTSL 2 BASIC24.03■■□□□ 1.44
PCDHA1Q9Y5I3 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC24.03■■□□□ 1.44
PCDHA1Q9Y5I3 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC24.03■■□□□ 1.44
PCDHA1Q9Y5I3 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC24.03■■□□□ 1.44
PCDHA1Q9Y5I3 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC24.03■■□□□ 1.44
PCDHA1Q9Y5I3 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
PCDHA1Q9Y5I3 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC24.03■■□□□ 1.44
PCDHA1Q9Y5I3 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC24.03■■□□□ 1.44
PCDHA1Q9Y5I3 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC24.02■■□□□ 1.44
PCDHA1Q9Y5I3 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC24.02■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms