Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC20.81■□□□□ 0.92
VPS9D1Q9Y2B5 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS9D1Q9Y2B5 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.81■□□□□ 0.92
VPS9D1Q9Y2B5 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS9D1Q9Y2B5 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
VPS9D1Q9Y2B5 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS9D1Q9Y2B5 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS9D1Q9Y2B5 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.81■□□□□ 0.92
VPS9D1Q9Y2B5 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.8■□□□□ 0.92
VPS9D1Q9Y2B5 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VPS9D1Q9Y2B5 AC019069.1-201ENST00000610008 1333 ntBASIC20.8■□□□□ 0.92
VPS9D1Q9Y2B5 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS9D1Q9Y2B5 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS9D1Q9Y2B5 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
VPS9D1Q9Y2B5 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS9D1Q9Y2B5 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS9D1Q9Y2B5 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS9D1Q9Y2B5 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS9D1Q9Y2B5 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC20.8■□□□□ 0.92
VPS9D1Q9Y2B5 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC20.8■□□□□ 0.92
VPS9D1Q9Y2B5 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.8■□□□□ 0.92
VPS9D1Q9Y2B5 AP004607.4-201ENST00000530158 1459 ntBASIC20.8■□□□□ 0.92
VPS9D1Q9Y2B5 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.8■□□□□ 0.92
VPS9D1Q9Y2B5 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS9D1Q9Y2B5 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
VPS9D1Q9Y2B5 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
VPS9D1Q9Y2B5 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
VPS9D1Q9Y2B5 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.79■□□□□ 0.92
VPS9D1Q9Y2B5 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC20.79■□□□□ 0.92
VPS9D1Q9Y2B5 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC20.79■□□□□ 0.92
VPS9D1Q9Y2B5 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS9D1Q9Y2B5 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.79■□□□□ 0.92
VPS9D1Q9Y2B5 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
VPS9D1Q9Y2B5 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS9D1Q9Y2B5 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS9D1Q9Y2B5 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS9D1Q9Y2B5 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS9D1Q9Y2B5 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.78■□□□□ 0.92
VPS9D1Q9Y2B5 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS9D1Q9Y2B5 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS9D1Q9Y2B5 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VPS9D1Q9Y2B5 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VPS9D1Q9Y2B5 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS9D1Q9Y2B5 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.78■□□□□ 0.92
VPS9D1Q9Y2B5 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS9D1Q9Y2B5 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
VPS9D1Q9Y2B5 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.78■□□□□ 0.92
VPS9D1Q9Y2B5 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS9D1Q9Y2B5 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC20.78■□□□□ 0.92
VPS9D1Q9Y2B5 AC138907.5-202ENST00000569484 235 ntBASIC20.78■□□□□ 0.92
VPS9D1Q9Y2B5 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC20.78■□□□□ 0.92
VPS9D1Q9Y2B5 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
VPS9D1Q9Y2B5 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.78■□□□□ 0.92
VPS9D1Q9Y2B5 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.77■□□□□ 0.92
VPS9D1Q9Y2B5 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
VPS9D1Q9Y2B5 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS9D1Q9Y2B5 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS9D1Q9Y2B5 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS9D1Q9Y2B5 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC20.77■□□□□ 0.92
VPS9D1Q9Y2B5 AC120498.10-201ENST00000621827 505 ntBASIC20.77■□□□□ 0.92
VPS9D1Q9Y2B5 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
VPS9D1Q9Y2B5 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.77■□□□□ 0.92
VPS9D1Q9Y2B5 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
VPS9D1Q9Y2B5 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
VPS9D1Q9Y2B5 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
VPS9D1Q9Y2B5 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.76■□□□□ 0.91
VPS9D1Q9Y2B5 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
VPS9D1Q9Y2B5 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS9D1Q9Y2B5 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VPS9D1Q9Y2B5 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
VPS9D1Q9Y2B5 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS9D1Q9Y2B5 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC20.76■□□□□ 0.91
VPS9D1Q9Y2B5 TERF1P2-201ENST00000583350 1212 ntBASIC20.76■□□□□ 0.91
VPS9D1Q9Y2B5 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.76■□□□□ 0.91
VPS9D1Q9Y2B5 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.76■□□□□ 0.91
VPS9D1Q9Y2B5 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20.76■□□□□ 0.91
VPS9D1Q9Y2B5 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS9D1Q9Y2B5 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
VPS9D1Q9Y2B5 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS9D1Q9Y2B5 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS9D1Q9Y2B5 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
VPS9D1Q9Y2B5 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
VPS9D1Q9Y2B5 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS9D1Q9Y2B5 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC20.76■□□□□ 0.91
VPS9D1Q9Y2B5 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.75■□□□□ 0.91
VPS9D1Q9Y2B5 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS9D1Q9Y2B5 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.75■□□□□ 0.91
VPS9D1Q9Y2B5 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS9D1Q9Y2B5 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS9D1Q9Y2B5 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC20.75■□□□□ 0.91
VPS9D1Q9Y2B5 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.75■□□□□ 0.91
VPS9D1Q9Y2B5 SERP1-208ENST00000491660 830 ntTSL 2 BASIC20.75■□□□□ 0.91
VPS9D1Q9Y2B5 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC20.75■□□□□ 0.91
VPS9D1Q9Y2B5 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS9D1Q9Y2B5 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
VPS9D1Q9Y2B5 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS9D1Q9Y2B5 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
VPS9D1Q9Y2B5 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.74■□□□□ 0.91
VPS9D1Q9Y2B5 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS9D1Q9Y2B5 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms