Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC21.81■■□□□ 1.08
DDX56Q9NY93 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
DDX56Q9NY93 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
DDX56Q9NY93 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
DDX56Q9NY93 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC21.81■■□□□ 1.08
DDX56Q9NY93 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
DDX56Q9NY93 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
DDX56Q9NY93 RHOF-204ENST00000537265 699 ntTSL 2 BASIC21.81■■□□□ 1.08
DDX56Q9NY93 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
DDX56Q9NY93 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.81■■□□□ 1.08
DDX56Q9NY93 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
DDX56Q9NY93 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
DDX56Q9NY93 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
DDX56Q9NY93 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
DDX56Q9NY93 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
DDX56Q9NY93 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
DDX56Q9NY93 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
DDX56Q9NY93 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC21.8■■□□□ 1.08
DDX56Q9NY93 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
DDX56Q9NY93 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.8■■□□□ 1.08
DDX56Q9NY93 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
DDX56Q9NY93 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC21.8■■□□□ 1.08
DDX56Q9NY93 MTURN-203ENST00000409688 843 ntTSL 2 BASIC21.8■■□□□ 1.08
DDX56Q9NY93 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC21.8■■□□□ 1.08
DDX56Q9NY93 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
DDX56Q9NY93 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
DDX56Q9NY93 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC21.8■■□□□ 1.08
DDX56Q9NY93 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
DDX56Q9NY93 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
DDX56Q9NY93 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
DDX56Q9NY93 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC21.79■■□□□ 1.08
DDX56Q9NY93 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
DDX56Q9NY93 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.79■■□□□ 1.08
DDX56Q9NY93 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
DDX56Q9NY93 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
DDX56Q9NY93 NME4-202ENST00000382940 766 ntTSL 3 BASIC21.79■■□□□ 1.08
DDX56Q9NY93 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC21.79■■□□□ 1.08
DDX56Q9NY93 NME4-211ENST00000620944 1193 ntTSL 2 BASIC21.79■■□□□ 1.08
DDX56Q9NY93 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
DDX56Q9NY93 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC21.79■■□□□ 1.08
DDX56Q9NY93 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
DDX56Q9NY93 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
DDX56Q9NY93 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.79■■□□□ 1.08
DDX56Q9NY93 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
DDX56Q9NY93 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC21.79■■□□□ 1.08
DDX56Q9NY93 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
DDX56Q9NY93 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
DDX56Q9NY93 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
DDX56Q9NY93 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC21.78■■□□□ 1.08
DDX56Q9NY93 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.78■■□□□ 1.08
DDX56Q9NY93 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
DDX56Q9NY93 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC21.78■■□□□ 1.08
DDX56Q9NY93 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC21.78■■□□□ 1.08
DDX56Q9NY93 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
DDX56Q9NY93 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.78■■□□□ 1.08
DDX56Q9NY93 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
DDX56Q9NY93 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
DDX56Q9NY93 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC21.78■■□□□ 1.08
DDX56Q9NY93 AC005837.3-201ENST00000612163 286 ntBASIC21.78■■□□□ 1.08
DDX56Q9NY93 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
DDX56Q9NY93 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
DDX56Q9NY93 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC21.78■■□□□ 1.08
DDX56Q9NY93 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
DDX56Q9NY93 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC21.78■■□□□ 1.08
DDX56Q9NY93 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
DDX56Q9NY93 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC21.78■■□□□ 1.08
DDX56Q9NY93 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
DDX56Q9NY93 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
DDX56Q9NY93 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC21.77■■□□□ 1.08
DDX56Q9NY93 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
DDX56Q9NY93 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
DDX56Q9NY93 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
DDX56Q9NY93 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC21.77■■□□□ 1.08
DDX56Q9NY93 AC006128.1-201ENST00000624704 1661 ntBASIC21.77■■□□□ 1.08
DDX56Q9NY93 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
DDX56Q9NY93 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
DDX56Q9NY93 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC21.77■■□□□ 1.08
DDX56Q9NY93 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC21.77■■□□□ 1.08
DDX56Q9NY93 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
DDX56Q9NY93 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
DDX56Q9NY93 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
DDX56Q9NY93 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
DDX56Q9NY93 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
DDX56Q9NY93 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
DDX56Q9NY93 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
DDX56Q9NY93 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
DDX56Q9NY93 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
DDX56Q9NY93 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
DDX56Q9NY93 IRS3P-201ENST00000223076 1006 ntBASIC21.76■■□□□ 1.07
DDX56Q9NY93 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
DDX56Q9NY93 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC21.76■■□□□ 1.07
DDX56Q9NY93 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
DDX56Q9NY93 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
DDX56Q9NY93 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
DDX56Q9NY93 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC21.76■■□□□ 1.07
DDX56Q9NY93 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
DDX56Q9NY93 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
DDX56Q9NY93 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC21.76■■□□□ 1.07
DDX56Q9NY93 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.76■■□□□ 1.07
DDX56Q9NY93 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms