Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
CHD8Q9HCK8 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC19.82■□□□□ 0.76
CHD8Q9HCK8 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CHD8Q9HCK8 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHD8Q9HCK8 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHD8Q9HCK8 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CHD8Q9HCK8 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
CHD8Q9HCK8 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC19.82■□□□□ 0.76
CHD8Q9HCK8 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
CHD8Q9HCK8 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
CHD8Q9HCK8 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CHD8Q9HCK8 ISCU-203ENST00000431221 799 ntTSL 2 BASIC19.82■□□□□ 0.76
CHD8Q9HCK8 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC19.82■□□□□ 0.76
CHD8Q9HCK8 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CHD8Q9HCK8 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHD8Q9HCK8 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHD8Q9HCK8 KRT18P48-201ENST00000434763 852 ntBASIC19.81■□□□□ 0.76
CHD8Q9HCK8 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC19.81■□□□□ 0.76
CHD8Q9HCK8 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CHD8Q9HCK8 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHD8Q9HCK8 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CHD8Q9HCK8 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CHD8Q9HCK8 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC19.81■□□□□ 0.76
CHD8Q9HCK8 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CHD8Q9HCK8 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC19.81■□□□□ 0.76
CHD8Q9HCK8 DECR2-212ENST00000627716 352 ntTSL 2 BASIC19.81■□□□□ 0.76
CHD8Q9HCK8 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC19.8■□□□□ 0.76
CHD8Q9HCK8 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHD8Q9HCK8 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CHD8Q9HCK8 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC19.8■□□□□ 0.76
CHD8Q9HCK8 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC19.8■□□□□ 0.76
CHD8Q9HCK8 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CHD8Q9HCK8 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CHD8Q9HCK8 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHD8Q9HCK8 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC19.8■□□□□ 0.76
CHD8Q9HCK8 THEM4-205ENST00000489410 643 ntTSL 2 BASIC19.8■□□□□ 0.76
CHD8Q9HCK8 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHD8Q9HCK8 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC19.8■□□□□ 0.76
CHD8Q9HCK8 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.8■□□□□ 0.76
CHD8Q9HCK8 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
CHD8Q9HCK8 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
CHD8Q9HCK8 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC19.79■□□□□ 0.76
CHD8Q9HCK8 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CHD8Q9HCK8 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHD8Q9HCK8 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHD8Q9HCK8 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
CHD8Q9HCK8 AC100791.3-201ENST00000617619 330 ntBASIC19.79■□□□□ 0.76
CHD8Q9HCK8 AC006557.6-201ENST00000623071 864 ntBASIC19.79■□□□□ 0.76
CHD8Q9HCK8 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CHD8Q9HCK8 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHD8Q9HCK8 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHD8Q9HCK8 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHD8Q9HCK8 REXO2-208ENST00000539754 791 ntTSL 2 BASIC19.79■□□□□ 0.76
CHD8Q9HCK8 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHD8Q9HCK8 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC19.79■□□□□ 0.76
CHD8Q9HCK8 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC19.79■□□□□ 0.76
CHD8Q9HCK8 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHD8Q9HCK8 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHD8Q9HCK8 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
CHD8Q9HCK8 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
CHD8Q9HCK8 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHD8Q9HCK8 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
CHD8Q9HCK8 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC19.78■□□□□ 0.76
CHD8Q9HCK8 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC19.78■□□□□ 0.76
CHD8Q9HCK8 AC145676.1-201ENST00000514988 2004 ntBASIC19.78■□□□□ 0.76
CHD8Q9HCK8 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
CHD8Q9HCK8 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC19.78■□□□□ 0.76
CHD8Q9HCK8 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC19.78■□□□□ 0.76
CHD8Q9HCK8 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC19.78■□□□□ 0.76
CHD8Q9HCK8 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.78■□□□□ 0.76
CHD8Q9HCK8 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
CHD8Q9HCK8 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHD8Q9HCK8 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CHD8Q9HCK8 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC19.78■□□□□ 0.76
CHD8Q9HCK8 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
CHD8Q9HCK8 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHD8Q9HCK8 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
CHD8Q9HCK8 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC19.78■□□□□ 0.76
CHD8Q9HCK8 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CHD8Q9HCK8 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CHD8Q9HCK8 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CHD8Q9HCK8 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CHD8Q9HCK8 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CHD8Q9HCK8 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC19.77■□□□□ 0.76
CHD8Q9HCK8 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHD8Q9HCK8 AP004607.7-201ENST00000527152 1677 ntBASIC19.77■□□□□ 0.76
CHD8Q9HCK8 OR7E47P-201ENST00000546390 1422 ntBASIC19.77■□□□□ 0.76
CHD8Q9HCK8 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHD8Q9HCK8 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CHD8Q9HCK8 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHD8Q9HCK8 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
CHD8Q9HCK8 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHD8Q9HCK8 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHD8Q9HCK8 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
CHD8Q9HCK8 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC19.77■□□□□ 0.75
CHD8Q9HCK8 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC19.77■□□□□ 0.75
CHD8Q9HCK8 AC120498.10-201ENST00000621827 505 ntBASIC19.77■□□□□ 0.75
CHD8Q9HCK8 GLDC-219ENST00000640208 420 ntTSL 2 BASIC19.77■□□□□ 0.75
CHD8Q9HCK8 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.77■□□□□ 0.75
CHD8Q9HCK8 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms