Protein–RNA interactions for Protein: Q8WU17

RNF139, E3 ubiquitin-protein ligase RNF139, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF139Q8WU17 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC22.03■■□□□ 1.12
RNF139Q8WU17 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC22.03■■□□□ 1.12
RNF139Q8WU17 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC22.03■■□□□ 1.12
RNF139Q8WU17 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
RNF139Q8WU17 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
RNF139Q8WU17 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
RNF139Q8WU17 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC22.03■■□□□ 1.12
RNF139Q8WU17 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
RNF139Q8WU17 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
RNF139Q8WU17 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
RNF139Q8WU17 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
RNF139Q8WU17 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
RNF139Q8WU17 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
RNF139Q8WU17 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
RNF139Q8WU17 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC22.02■■□□□ 1.12
RNF139Q8WU17 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
RNF139Q8WU17 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
RNF139Q8WU17 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC22.02■■□□□ 1.12
RNF139Q8WU17 DLX3-202ENST00000512495 834 ntTSL 2 BASIC22.02■■□□□ 1.12
RNF139Q8WU17 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC22.02■■□□□ 1.12
RNF139Q8WU17 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC22.02■■□□□ 1.12
RNF139Q8WU17 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
RNF139Q8WU17 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC22.02■■□□□ 1.12
RNF139Q8WU17 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.11
RNF139Q8WU17 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
RNF139Q8WU17 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
RNF139Q8WU17 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC22.01■■□□□ 1.11
RNF139Q8WU17 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
RNF139Q8WU17 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
RNF139Q8WU17 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC22.01■■□□□ 1.11
RNF139Q8WU17 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
RNF139Q8WU17 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC22.01■■□□□ 1.11
RNF139Q8WU17 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
RNF139Q8WU17 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
RNF139Q8WU17 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
RNF139Q8WU17 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
RNF139Q8WU17 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
RNF139Q8WU17 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC22■■□□□ 1.11
RNF139Q8WU17 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
RNF139Q8WU17 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC22■■□□□ 1.11
RNF139Q8WU17 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
RNF139Q8WU17 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
RNF139Q8WU17 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC22■■□□□ 1.11
RNF139Q8WU17 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC22■■□□□ 1.11
RNF139Q8WU17 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC22■■□□□ 1.11
RNF139Q8WU17 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC22■■□□□ 1.11
RNF139Q8WU17 SLC7A5P2-201ENST00000553010 536 ntBASIC22■■□□□ 1.11
RNF139Q8WU17 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC22■■□□□ 1.11
RNF139Q8WU17 MYCNOS-205ENST00000641950 531 ntBASIC22■■□□□ 1.11
RNF139Q8WU17 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.11
RNF139Q8WU17 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
RNF139Q8WU17 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
RNF139Q8WU17 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC22■■□□□ 1.11
RNF139Q8WU17 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC22■■□□□ 1.11
RNF139Q8WU17 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
RNF139Q8WU17 TUB-203ENST00000534099 1759 ntTSL 2 BASIC21.99■■□□□ 1.11
RNF139Q8WU17 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC21.99■■□□□ 1.11
RNF139Q8WU17 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
RNF139Q8WU17 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC21.99■■□□□ 1.11
RNF139Q8WU17 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
RNF139Q8WU17 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
RNF139Q8WU17 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.99■■□□□ 1.11
RNF139Q8WU17 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
RNF139Q8WU17 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
RNF139Q8WU17 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC21.99■■□□□ 1.11
RNF139Q8WU17 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
RNF139Q8WU17 VPS53-216ENST00000574029 585 ntTSL 4 BASIC21.99■■□□□ 1.11
RNF139Q8WU17 AC080038.1-201ENST00000611274 1154 ntBASIC21.99■■□□□ 1.11
RNF139Q8WU17 AC011767.1-201ENST00000617410 1153 ntBASIC21.99■■□□□ 1.11
RNF139Q8WU17 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
RNF139Q8WU17 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
RNF139Q8WU17 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
RNF139Q8WU17 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
RNF139Q8WU17 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC21.98■■□□□ 1.11
RNF139Q8WU17 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
RNF139Q8WU17 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
RNF139Q8WU17 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
RNF139Q8WU17 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
RNF139Q8WU17 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.98■■□□□ 1.11
RNF139Q8WU17 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC21.98■■□□□ 1.11
RNF139Q8WU17 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC21.98■■□□□ 1.11
RNF139Q8WU17 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.98■■□□□ 1.11
RNF139Q8WU17 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
RNF139Q8WU17 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
RNF139Q8WU17 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
RNF139Q8WU17 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
RNF139Q8WU17 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC21.98■■□□□ 1.11
RNF139Q8WU17 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
RNF139Q8WU17 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC21.97■■□□□ 1.11
RNF139Q8WU17 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC21.97■■□□□ 1.11
RNF139Q8WU17 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
RNF139Q8WU17 AC061975.6-201ENST00000579045 1553 ntBASIC21.97■■□□□ 1.11
RNF139Q8WU17 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.97■■□□□ 1.11
RNF139Q8WU17 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC21.97■■□□□ 1.11
RNF139Q8WU17 TFG-210ENST00000620299 1289 ntTSL 5 BASIC21.97■■□□□ 1.11
RNF139Q8WU17 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
RNF139Q8WU17 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
RNF139Q8WU17 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC21.97■■□□□ 1.11
RNF139Q8WU17 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
RNF139Q8WU17 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms