Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
ZNF540Q8NDQ6 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
ZNF540Q8NDQ6 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.33■□□□□ 0.68
ZNF540Q8NDQ6 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.33■□□□□ 0.68
ZNF540Q8NDQ6 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
ZNF540Q8NDQ6 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.33■□□□□ 0.68
ZNF540Q8NDQ6 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.32■□□□□ 0.68
ZNF540Q8NDQ6 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ZNF540Q8NDQ6 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
ZNF540Q8NDQ6 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ZNF540Q8NDQ6 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC19.32■□□□□ 0.68
ZNF540Q8NDQ6 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
ZNF540Q8NDQ6 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC19.32■□□□□ 0.68
ZNF540Q8NDQ6 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC19.32■□□□□ 0.68
ZNF540Q8NDQ6 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
ZNF540Q8NDQ6 GABARAPL3-202ENST00000624044 1851 ntBASIC19.32■□□□□ 0.68
ZNF540Q8NDQ6 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ZNF540Q8NDQ6 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ZNF540Q8NDQ6 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.31■□□□□ 0.68
ZNF540Q8NDQ6 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
ZNF540Q8NDQ6 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC19.31■□□□□ 0.68
ZNF540Q8NDQ6 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
ZNF540Q8NDQ6 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ZNF540Q8NDQ6 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ZNF540Q8NDQ6 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.31■□□□□ 0.68
ZNF540Q8NDQ6 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.31■□□□□ 0.68
ZNF540Q8NDQ6 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
ZNF540Q8NDQ6 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
ZNF540Q8NDQ6 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.31■□□□□ 0.68
ZNF540Q8NDQ6 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
ZNF540Q8NDQ6 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC19.31■□□□□ 0.68
ZNF540Q8NDQ6 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
ZNF540Q8NDQ6 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC19.31■□□□□ 0.68
ZNF540Q8NDQ6 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ZNF540Q8NDQ6 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ZNF540Q8NDQ6 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.31■□□□□ 0.68
ZNF540Q8NDQ6 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
ZNF540Q8NDQ6 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.31■□□□□ 0.68
ZNF540Q8NDQ6 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ZNF540Q8NDQ6 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ZNF540Q8NDQ6 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
ZNF540Q8NDQ6 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
ZNF540Q8NDQ6 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.3■□□□□ 0.68
ZNF540Q8NDQ6 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.3■□□□□ 0.68
ZNF540Q8NDQ6 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ZNF540Q8NDQ6 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ZNF540Q8NDQ6 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
ZNF540Q8NDQ6 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.3■□□□□ 0.68
ZNF540Q8NDQ6 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ZNF540Q8NDQ6 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ZNF540Q8NDQ6 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.3■□□□□ 0.68
ZNF540Q8NDQ6 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ZNF540Q8NDQ6 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ZNF540Q8NDQ6 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC19.3■□□□□ 0.68
ZNF540Q8NDQ6 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ZNF540Q8NDQ6 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC19.3■□□□□ 0.68
ZNF540Q8NDQ6 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ZNF540Q8NDQ6 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC19.3■□□□□ 0.68
ZNF540Q8NDQ6 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.3■□□□□ 0.68
ZNF540Q8NDQ6 GATM-206ENST00000558336 1522 ntTSL 2 BASIC19.3■□□□□ 0.68
ZNF540Q8NDQ6 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ZNF540Q8NDQ6 PCDHAC2-203ENST00000615316 3011 ntBASIC19.3■□□□□ 0.68
ZNF540Q8NDQ6 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ZNF540Q8NDQ6 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ZNF540Q8NDQ6 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ZNF540Q8NDQ6 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
ZNF540Q8NDQ6 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
ZNF540Q8NDQ6 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ZNF540Q8NDQ6 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.29■□□□□ 0.68
ZNF540Q8NDQ6 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ZNF540Q8NDQ6 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ZNF540Q8NDQ6 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ZNF540Q8NDQ6 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ZNF540Q8NDQ6 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ZNF540Q8NDQ6 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.29■□□□□ 0.68
ZNF540Q8NDQ6 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ZNF540Q8NDQ6 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.29■□□□□ 0.68
ZNF540Q8NDQ6 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ZNF540Q8NDQ6 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC19.28■□□□□ 0.68
ZNF540Q8NDQ6 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ZNF540Q8NDQ6 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ZNF540Q8NDQ6 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
ZNF540Q8NDQ6 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
ZNF540Q8NDQ6 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ZNF540Q8NDQ6 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.28■□□□□ 0.68
ZNF540Q8NDQ6 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
ZNF540Q8NDQ6 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.28■□□□□ 0.68
ZNF540Q8NDQ6 UNC93B3-201ENST00000308076 687 ntBASIC19.28■□□□□ 0.68
ZNF540Q8NDQ6 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ZNF540Q8NDQ6 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC19.28■□□□□ 0.68
ZNF540Q8NDQ6 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.28■□□□□ 0.68
ZNF540Q8NDQ6 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
ZNF540Q8NDQ6 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
ZNF540Q8NDQ6 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
ZNF540Q8NDQ6 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.28■□□□□ 0.68
ZNF540Q8NDQ6 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC19.28■□□□□ 0.68
ZNF540Q8NDQ6 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
ZNF540Q8NDQ6 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ZNF540Q8NDQ6 AC135279.3-201ENST00000610945 1311 ntBASIC19.27■□□□□ 0.68
ZNF540Q8NDQ6 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms