Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC21.59■■□□□ 1.05
SLC44A3Q8N4M1 AC087742.1-201ENST00000575880 1738 ntBASIC21.59■■□□□ 1.05
SLC44A3Q8N4M1 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SLC44A3Q8N4M1 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SLC44A3Q8N4M1 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
SLC44A3Q8N4M1 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
SLC44A3Q8N4M1 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SLC44A3Q8N4M1 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
SLC44A3Q8N4M1 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
SLC44A3Q8N4M1 KRT17P3-201ENST00000420566 1262 ntBASIC21.58■■□□□ 1.05
SLC44A3Q8N4M1 ECEL1P3-201ENST00000427961 737 ntBASIC21.58■■□□□ 1.05
SLC44A3Q8N4M1 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SLC44A3Q8N4M1 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC21.58■■□□□ 1.05
SLC44A3Q8N4M1 RN7SL471P-201ENST00000580476 299 ntBASIC21.58■■□□□ 1.05
SLC44A3Q8N4M1 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC21.58■■□□□ 1.05
SLC44A3Q8N4M1 Z99916.2-201ENST00000604037 246 ntBASIC21.58■■□□□ 1.05
SLC44A3Q8N4M1 AC073912.3-201ENST00000624414 853 ntBASIC21.58■■□□□ 1.05
SLC44A3Q8N4M1 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
SLC44A3Q8N4M1 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
SLC44A3Q8N4M1 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC21.58■■□□□ 1.04
SLC44A3Q8N4M1 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.04
SLC44A3Q8N4M1 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
SLC44A3Q8N4M1 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
SLC44A3Q8N4M1 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SLC44A3Q8N4M1 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.57■■□□□ 1.04
SLC44A3Q8N4M1 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SLC44A3Q8N4M1 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
SLC44A3Q8N4M1 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC21.57■■□□□ 1.04
SLC44A3Q8N4M1 GXYLT1P3-201ENST00000453058 1193 ntBASIC21.57■■□□□ 1.04
SLC44A3Q8N4M1 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC21.57■■□□□ 1.04
SLC44A3Q8N4M1 PNMA6B-201ENST00000538162 1200 ntBASIC21.57■■□□□ 1.04
SLC44A3Q8N4M1 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC21.57■■□□□ 1.04
SLC44A3Q8N4M1 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SLC44A3Q8N4M1 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SLC44A3Q8N4M1 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
SLC44A3Q8N4M1 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC21.56■■□□□ 1.04
SLC44A3Q8N4M1 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SLC44A3Q8N4M1 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
SLC44A3Q8N4M1 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SLC44A3Q8N4M1 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SLC44A3Q8N4M1 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC21.56■■□□□ 1.04
SLC44A3Q8N4M1 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
SLC44A3Q8N4M1 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SLC44A3Q8N4M1 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SLC44A3Q8N4M1 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
SLC44A3Q8N4M1 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SLC44A3Q8N4M1 CDV3P1-201ENST00000471403 739 ntBASIC21.56■■□□□ 1.04
SLC44A3Q8N4M1 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC21.56■■□□□ 1.04
SLC44A3Q8N4M1 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SLC44A3Q8N4M1 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SLC44A3Q8N4M1 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
SLC44A3Q8N4M1 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC21.56■■□□□ 1.04
SLC44A3Q8N4M1 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
SLC44A3Q8N4M1 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SLC44A3Q8N4M1 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
SLC44A3Q8N4M1 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SLC44A3Q8N4M1 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SLC44A3Q8N4M1 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SLC44A3Q8N4M1 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
SLC44A3Q8N4M1 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC21.55■■□□□ 1.04
SLC44A3Q8N4M1 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC21.55■■□□□ 1.04
SLC44A3Q8N4M1 AL589743.5-201ENST00000616611 1050 ntBASIC21.55■■□□□ 1.04
SLC44A3Q8N4M1 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SLC44A3Q8N4M1 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
SLC44A3Q8N4M1 AC139530.1-201ENST00000575312 1977 ntBASIC21.55■■□□□ 1.04
SLC44A3Q8N4M1 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SLC44A3Q8N4M1 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
SLC44A3Q8N4M1 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
SLC44A3Q8N4M1 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SLC44A3Q8N4M1 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SLC44A3Q8N4M1 AC003102.1-202ENST00000563394 1796 ntBASIC21.54■■□□□ 1.04
SLC44A3Q8N4M1 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
SLC44A3Q8N4M1 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
SLC44A3Q8N4M1 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC21.54■■□□□ 1.04
SLC44A3Q8N4M1 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC21.54■■□□□ 1.04
SLC44A3Q8N4M1 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SLC44A3Q8N4M1 SPIB-206ENST00000596074 847 ntTSL 2 BASIC21.54■■□□□ 1.04
SLC44A3Q8N4M1 REXO1L12P-201ENST00000622156 912 ntBASIC21.54■■□□□ 1.04
SLC44A3Q8N4M1 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SLC44A3Q8N4M1 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SLC44A3Q8N4M1 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SLC44A3Q8N4M1 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SLC44A3Q8N4M1 AC092368.3-202ENST00000574180 1591 ntBASIC21.53■■□□□ 1.04
SLC44A3Q8N4M1 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SLC44A3Q8N4M1 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
SLC44A3Q8N4M1 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SLC44A3Q8N4M1 MCRIP2P1-201ENST00000394346 511 ntBASIC21.53■■□□□ 1.04
SLC44A3Q8N4M1 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SLC44A3Q8N4M1 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SLC44A3Q8N4M1 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC21.53■■□□□ 1.04
SLC44A3Q8N4M1 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC21.53■■□□□ 1.04
SLC44A3Q8N4M1 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SLC44A3Q8N4M1 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC21.53■■□□□ 1.04
SLC44A3Q8N4M1 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SLC44A3Q8N4M1 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SLC44A3Q8N4M1 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SLC44A3Q8N4M1 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
SLC44A3Q8N4M1 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC21.53■■□□□ 1.04
SLC44A3Q8N4M1 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC21.52■■□□□ 1.04
SLC44A3Q8N4M1 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms