Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC17.37■□□□□ 0.37
CSPG4Q6UVK1 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC17.37■□□□□ 0.37
CSPG4Q6UVK1 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
CSPG4Q6UVK1 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC17.37■□□□□ 0.37
CSPG4Q6UVK1 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC17.37■□□□□ 0.37
CSPG4Q6UVK1 AC120498.10-201ENST00000621827 505 ntBASIC17.37■□□□□ 0.37
CSPG4Q6UVK1 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CSPG4Q6UVK1 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CSPG4Q6UVK1 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC17.37■□□□□ 0.37
CSPG4Q6UVK1 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CSPG4Q6UVK1 CD44-222ENST00000526025 1052 ntTSL 2 BASIC17.36■□□□□ 0.37
CSPG4Q6UVK1 BX088651.1-201ENST00000540551 451 ntBASIC17.36■□□□□ 0.37
CSPG4Q6UVK1 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CSPG4Q6UVK1 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CSPG4Q6UVK1 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CSPG4Q6UVK1 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC17.36■□□□□ 0.37
CSPG4Q6UVK1 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
CSPG4Q6UVK1 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CSPG4Q6UVK1 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC17.36■□□□□ 0.37
CSPG4Q6UVK1 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC17.36■□□□□ 0.37
CSPG4Q6UVK1 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC17.36■□□□□ 0.37
CSPG4Q6UVK1 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CSPG4Q6UVK1 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC17.35■□□□□ 0.37
CSPG4Q6UVK1 C1QBPP2-201ENST00000528754 825 ntBASIC17.35■□□□□ 0.37
CSPG4Q6UVK1 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
CSPG4Q6UVK1 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC17.35■□□□□ 0.37
CSPG4Q6UVK1 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CSPG4Q6UVK1 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC17.35■□□□□ 0.37
CSPG4Q6UVK1 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CSPG4Q6UVK1 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CSPG4Q6UVK1 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC17.35■□□□□ 0.37
CSPG4Q6UVK1 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CSPG4Q6UVK1 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CSPG4Q6UVK1 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CSPG4Q6UVK1 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CSPG4Q6UVK1 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC17.35■□□□□ 0.37
CSPG4Q6UVK1 AC008175.2-201ENST00000612840 297 ntBASIC17.35■□□□□ 0.37
CSPG4Q6UVK1 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC17.35■□□□□ 0.37
CSPG4Q6UVK1 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
CSPG4Q6UVK1 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC17.34■□□□□ 0.37
CSPG4Q6UVK1 RARG-204ENST00000543726 1779 ntTSL 2 BASIC17.34■□□□□ 0.37
CSPG4Q6UVK1 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CSPG4Q6UVK1 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CSPG4Q6UVK1 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CSPG4Q6UVK1 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CSPG4Q6UVK1 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CSPG4Q6UVK1 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC17.34■□□□□ 0.37
CSPG4Q6UVK1 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC17.34■□□□□ 0.37
CSPG4Q6UVK1 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CSPG4Q6UVK1 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC17.34■□□□□ 0.37
CSPG4Q6UVK1 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC17.34■□□□□ 0.37
CSPG4Q6UVK1 AC233263.1-201ENST00000578059 224 ntBASIC17.34■□□□□ 0.37
CSPG4Q6UVK1 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CSPG4Q6UVK1 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CSPG4Q6UVK1 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC17.33■□□□□ 0.37
CSPG4Q6UVK1 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CSPG4Q6UVK1 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CSPG4Q6UVK1 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CSPG4Q6UVK1 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CSPG4Q6UVK1 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC17.33■□□□□ 0.37
CSPG4Q6UVK1 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
CSPG4Q6UVK1 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
CSPG4Q6UVK1 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC17.33■□□□□ 0.36
CSPG4Q6UVK1 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC17.33■□□□□ 0.36
CSPG4Q6UVK1 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.36
CSPG4Q6UVK1 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CSPG4Q6UVK1 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC17.33■□□□□ 0.36
CSPG4Q6UVK1 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC17.33■□□□□ 0.36
CSPG4Q6UVK1 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC17.33■□□□□ 0.36
CSPG4Q6UVK1 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC17.33■□□□□ 0.36
CSPG4Q6UVK1 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC17.33■□□□□ 0.36
CSPG4Q6UVK1 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC17.33■□□□□ 0.36
CSPG4Q6UVK1 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CSPG4Q6UVK1 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
CSPG4Q6UVK1 AC069544.1-201ENST00000609399 999 ntBASIC17.32■□□□□ 0.36
CSPG4Q6UVK1 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CSPG4Q6UVK1 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC17.32■□□□□ 0.36
CSPG4Q6UVK1 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CSPG4Q6UVK1 AC137767.1-201ENST00000602918 1920 ntBASIC17.32■□□□□ 0.36
CSPG4Q6UVK1 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CSPG4Q6UVK1 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CSPG4Q6UVK1 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CSPG4Q6UVK1 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CSPG4Q6UVK1 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC17.32■□□□□ 0.36
CSPG4Q6UVK1 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CSPG4Q6UVK1 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC17.32■□□□□ 0.36
CSPG4Q6UVK1 AC053503.5-201ENST00000601508 636 ntBASIC17.32■□□□□ 0.36
CSPG4Q6UVK1 AC243732.1-201ENST00000612648 864 ntBASIC17.32■□□□□ 0.36
CSPG4Q6UVK1 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC17.32■□□□□ 0.36
CSPG4Q6UVK1 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CSPG4Q6UVK1 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CSPG4Q6UVK1 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CSPG4Q6UVK1 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CSPG4Q6UVK1 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC17.31■□□□□ 0.36
CSPG4Q6UVK1 LSM12P1-201ENST00000411836 588 ntBASIC17.31■□□□□ 0.36
CSPG4Q6UVK1 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CSPG4Q6UVK1 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CSPG4Q6UVK1 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CSPG4Q6UVK1 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC17.31■□□□□ 0.36
CSPG4Q6UVK1 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms