Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TERF1P5-201ENST00000477545 1207 ntBASIC20.12■□□□□ 0.81
COL28A1Q2UY09 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL28A1Q2UY09 RPS20-210ENST00000523936 899 ntTSL 2 BASIC20.12■□□□□ 0.81
COL28A1Q2UY09 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC20.12■□□□□ 0.81
COL28A1Q2UY09 AP003097.1-201ENST00000530657 1135 ntBASIC20.12■□□□□ 0.81
COL28A1Q2UY09 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC20.12■□□□□ 0.81
COL28A1Q2UY09 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.12■□□□□ 0.81
COL28A1Q2UY09 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC20.12■□□□□ 0.81
COL28A1Q2UY09 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL28A1Q2UY09 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL28A1Q2UY09 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
COL28A1Q2UY09 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL28A1Q2UY09 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.12■□□□□ 0.81
COL28A1Q2UY09 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
COL28A1Q2UY09 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL28A1Q2UY09 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL28A1Q2UY09 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL28A1Q2UY09 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL28A1Q2UY09 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL28A1Q2UY09 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
COL28A1Q2UY09 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.11■□□□□ 0.81
COL28A1Q2UY09 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC20.11■□□□□ 0.81
COL28A1Q2UY09 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL28A1Q2UY09 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL28A1Q2UY09 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL28A1Q2UY09 AL512625.2-201ENST00000417533 625 ntBASIC20.11■□□□□ 0.81
COL28A1Q2UY09 AC091874.3-201ENST00000512672 1195 ntBASIC20.11■□□□□ 0.81
COL28A1Q2UY09 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.11■□□□□ 0.81
COL28A1Q2UY09 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20.11■□□□□ 0.81
COL28A1Q2UY09 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL28A1Q2UY09 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.11■□□□□ 0.81
COL28A1Q2UY09 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
COL28A1Q2UY09 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
COL28A1Q2UY09 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL28A1Q2UY09 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.11■□□□□ 0.81
COL28A1Q2UY09 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.11■□□□□ 0.81
COL28A1Q2UY09 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
COL28A1Q2UY09 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL28A1Q2UY09 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL28A1Q2UY09 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
COL28A1Q2UY09 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.1■□□□□ 0.81
COL28A1Q2UY09 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
COL28A1Q2UY09 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL28A1Q2UY09 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL28A1Q2UY09 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL28A1Q2UY09 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL28A1Q2UY09 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.1■□□□□ 0.81
COL28A1Q2UY09 SNORA78-201ENST00000459373 127 ntBASIC20.1■□□□□ 0.81
COL28A1Q2UY09 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL28A1Q2UY09 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC20.1■□□□□ 0.81
COL28A1Q2UY09 AC069236.1-201ENST00000604339 616 ntBASIC20.1■□□□□ 0.81
COL28A1Q2UY09 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL28A1Q2UY09 AC009237.3-201ENST00000393279 1427 ntBASIC20.1■□□□□ 0.81
COL28A1Q2UY09 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
COL28A1Q2UY09 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.1■□□□□ 0.81
COL28A1Q2UY09 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL28A1Q2UY09 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.09■□□□□ 0.81
COL28A1Q2UY09 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.09■□□□□ 0.81
COL28A1Q2UY09 OXCT2P1-201ENST00000447263 1535 ntBASIC20.09■□□□□ 0.81
COL28A1Q2UY09 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL28A1Q2UY09 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.09■□□□□ 0.81
COL28A1Q2UY09 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.09■□□□□ 0.81
COL28A1Q2UY09 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC20.09■□□□□ 0.81
COL28A1Q2UY09 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL28A1Q2UY09 KRT18P20-201ENST00000548986 1279 ntBASIC20.09■□□□□ 0.81
COL28A1Q2UY09 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC20.09■□□□□ 0.81
COL28A1Q2UY09 FAM197Y4-202ENST00000622692 608 ntBASIC20.09■□□□□ 0.81
COL28A1Q2UY09 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL28A1Q2UY09 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
COL28A1Q2UY09 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL28A1Q2UY09 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.09■□□□□ 0.81
COL28A1Q2UY09 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL28A1Q2UY09 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL28A1Q2UY09 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL28A1Q2UY09 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL28A1Q2UY09 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.08■□□□□ 0.81
COL28A1Q2UY09 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
COL28A1Q2UY09 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
COL28A1Q2UY09 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL28A1Q2UY09 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
COL28A1Q2UY09 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
COL28A1Q2UY09 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
COL28A1Q2UY09 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC20.08■□□□□ 0.81
COL28A1Q2UY09 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC20.08■□□□□ 0.81
COL28A1Q2UY09 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
COL28A1Q2UY09 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.08■□□□□ 0.81
COL28A1Q2UY09 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL28A1Q2UY09 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL28A1Q2UY09 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL28A1Q2UY09 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL28A1Q2UY09 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL28A1Q2UY09 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL28A1Q2UY09 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20.08■□□□□ 0.8
COL28A1Q2UY09 C1orf229-201ENST00000623686 2258 ntBASIC20.07■□□□□ 0.8
COL28A1Q2UY09 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.07■□□□□ 0.8
COL28A1Q2UY09 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL28A1Q2UY09 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL28A1Q2UY09 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL28A1Q2UY09 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
COL28A1Q2UY09 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms