Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC20.21■□□□□ 0.83
PCDH1Q08174 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PCDH1Q08174 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDH1Q08174 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDH1Q08174 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDH1Q08174 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDH1Q08174 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDH1Q08174 POU5F1P4-201ENST00000413175 1085 ntBASIC20.2■□□□□ 0.82
PCDH1Q08174 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
PCDH1Q08174 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC20.2■□□□□ 0.82
PCDH1Q08174 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.2■□□□□ 0.82
PCDH1Q08174 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDH1Q08174 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PCDH1Q08174 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PCDH1Q08174 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDH1Q08174 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PCDH1Q08174 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
PCDH1Q08174 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PCDH1Q08174 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDH1Q08174 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
PCDH1Q08174 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDH1Q08174 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.19■□□□□ 0.82
PCDH1Q08174 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
PCDH1Q08174 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDH1Q08174 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDH1Q08174 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
PCDH1Q08174 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PCDH1Q08174 ZNRF2P3-201ENST00000424200 374 ntBASIC20.19■□□□□ 0.82
PCDH1Q08174 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PCDH1Q08174 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.19■□□□□ 0.82
PCDH1Q08174 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PCDH1Q08174 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDH1Q08174 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDH1Q08174 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDH1Q08174 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PCDH1Q08174 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDH1Q08174 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.18■□□□□ 0.82
PCDH1Q08174 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.18■□□□□ 0.82
PCDH1Q08174 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PCDH1Q08174 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.18■□□□□ 0.82
PCDH1Q08174 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDH1Q08174 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PCDH1Q08174 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PCDH1Q08174 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC20.18■□□□□ 0.82
PCDH1Q08174 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC20.18■□□□□ 0.82
PCDH1Q08174 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PCDH1Q08174 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDH1Q08174 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.18■□□□□ 0.82
PCDH1Q08174 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDH1Q08174 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PCDH1Q08174 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDH1Q08174 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.17■□□□□ 0.82
PCDH1Q08174 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PCDH1Q08174 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PCDH1Q08174 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.17■□□□□ 0.82
PCDH1Q08174 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
PCDH1Q08174 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
PCDH1Q08174 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
PCDH1Q08174 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
PCDH1Q08174 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC20.17■□□□□ 0.82
PCDH1Q08174 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.17■□□□□ 0.82
PCDH1Q08174 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.17■□□□□ 0.82
PCDH1Q08174 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.17■□□□□ 0.82
PCDH1Q08174 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDH1Q08174 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDH1Q08174 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
PCDH1Q08174 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDH1Q08174 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.17■□□□□ 0.82
PCDH1Q08174 AP004607.4-201ENST00000530158 1459 ntBASIC20.17■□□□□ 0.82
PCDH1Q08174 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDH1Q08174 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDH1Q08174 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.16■□□□□ 0.82
PCDH1Q08174 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
PCDH1Q08174 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.16■□□□□ 0.82
PCDH1Q08174 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDH1Q08174 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC20.16■□□□□ 0.82
PCDH1Q08174 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
PCDH1Q08174 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
PCDH1Q08174 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PCDH1Q08174 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.16■□□□□ 0.82
PCDH1Q08174 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC20.16■□□□□ 0.82
PCDH1Q08174 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC20.16■□□□□ 0.82
PCDH1Q08174 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20.16■□□□□ 0.82
PCDH1Q08174 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDH1Q08174 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PCDH1Q08174 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDH1Q08174 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.16■□□□□ 0.82
PCDH1Q08174 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.16■□□□□ 0.82
PCDH1Q08174 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDH1Q08174 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
PCDH1Q08174 AC061975.6-201ENST00000579045 1553 ntBASIC20.16■□□□□ 0.82
PCDH1Q08174 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
PCDH1Q08174 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.15■□□□□ 0.82
PCDH1Q08174 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.15■□□□□ 0.82
PCDH1Q08174 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC20.15■□□□□ 0.82
PCDH1Q08174 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC20.15■□□□□ 0.82
PCDH1Q08174 AC010141.2-201ENST00000452426 721 ntBASIC20.15■□□□□ 0.82
PCDH1Q08174 AC008175.2-201ENST00000612840 297 ntBASIC20.15■□□□□ 0.82
PCDH1Q08174 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDH1Q08174 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms