Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL7A1Q02388 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
COL7A1Q02388 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC15.19■□□□□ 0.02
COL7A1Q02388 ARMC10P1-201ENST00000313754 855 ntBASIC15.19■□□□□ 0.02
COL7A1Q02388 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
COL7A1Q02388 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL7A1Q02388 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC15.19■□□□□ 0.02
COL7A1Q02388 AC133561.5-201ENST00000635547 218 ntBASIC15.19■□□□□ 0.02
COL7A1Q02388 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL7A1Q02388 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
COL7A1Q02388 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
COL7A1Q02388 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC15.19■□□□□ 0.02
COL7A1Q02388 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC15.19■□□□□ 0.02
COL7A1Q02388 AC100791.3-201ENST00000617619 330 ntBASIC15.19■□□□□ 0.02
COL7A1Q02388 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC15.19■□□□□ 0.02
COL7A1Q02388 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC15.19■□□□□ 0.02
COL7A1Q02388 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL7A1Q02388 KRT17P2-201ENST00000300992 1314 ntBASIC15.18■□□□□ 0.02
COL7A1Q02388 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL7A1Q02388 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL7A1Q02388 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC15.18■□□□□ 0.02
COL7A1Q02388 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC15.18■□□□□ 0.02
COL7A1Q02388 AC053503.5-201ENST00000601508 636 ntBASIC15.18■□□□□ 0.02
COL7A1Q02388 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL7A1Q02388 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC15.18■□□□□ 0.02
COL7A1Q02388 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL7A1Q02388 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL7A1Q02388 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL7A1Q02388 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL7A1Q02388 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC15.18■□□□□ 0.02
COL7A1Q02388 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL7A1Q02388 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
COL7A1Q02388 LSM12P1-201ENST00000411836 588 ntBASIC15.18■□□□□ 0.02
COL7A1Q02388 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL7A1Q02388 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC15.18■□□□□ 0.02
COL7A1Q02388 AL353708.3-201ENST00000610272 989 ntBASIC15.18■□□□□ 0.02
COL7A1Q02388 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL7A1Q02388 AC061975.6-201ENST00000579045 1553 ntBASIC15.18■□□□□ 0.02
COL7A1Q02388 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL7A1Q02388 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL7A1Q02388 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC15.17■□□□□ 0.02
COL7A1Q02388 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC15.17■□□□□ 0.02
COL7A1Q02388 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC15.17■□□□□ 0.02
COL7A1Q02388 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC15.17■□□□□ 0.02
COL7A1Q02388 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC15.17■□□□□ 0.02
COL7A1Q02388 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL7A1Q02388 AL135905.2-201ENST00000584934 1404 ntBASIC15.17■□□□□ 0.02
COL7A1Q02388 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL7A1Q02388 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL7A1Q02388 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC15.17■□□□□ 0.02
COL7A1Q02388 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC15.17■□□□□ 0.02
COL7A1Q02388 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL7A1Q02388 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC15.17■□□□□ 0.02
COL7A1Q02388 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
COL7A1Q02388 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC15.16■□□□□ 0.02
COL7A1Q02388 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC15.16■□□□□ 0.02
COL7A1Q02388 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC15.16■□□□□ 0.02
COL7A1Q02388 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL7A1Q02388 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL7A1Q02388 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC15.16■□□□□ 0.02
COL7A1Q02388 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC15.16■□□□□ 0.02
COL7A1Q02388 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC15.16■□□□□ 0.02
COL7A1Q02388 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL7A1Q02388 AC142381.3-201ENST00000568208 1670 ntBASIC15.16■□□□□ 0.02
COL7A1Q02388 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
COL7A1Q02388 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC15.16■□□□□ 0.02
COL7A1Q02388 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC15.16■□□□□ 0.02
COL7A1Q02388 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL7A1Q02388 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC15.16■□□□□ 0.02
COL7A1Q02388 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC15.16■□□□□ 0.02
COL7A1Q02388 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL7A1Q02388 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL7A1Q02388 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL7A1Q02388 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL7A1Q02388 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL7A1Q02388 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL7A1Q02388 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
COL7A1Q02388 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL7A1Q02388 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC15.16■□□□□ 0.02
COL7A1Q02388 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL7A1Q02388 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC15.15■□□□□ 0.02
COL7A1Q02388 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL7A1Q02388 GCK-205ENST00000437084 1385 ntTSL 5 BASIC15.15■□□□□ 0.02
COL7A1Q02388 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC15.15■□□□□ 0.02
COL7A1Q02388 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC15.15■□□□□ 0.02
COL7A1Q02388 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC15.15■□□□□ 0.02
COL7A1Q02388 MIR4785-201ENST00000585005 73 ntBASIC15.15■□□□□ 0.02
COL7A1Q02388 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL7A1Q02388 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC15.15■□□□□ 0.02
COL7A1Q02388 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC15.15■□□□□ 0.02
COL7A1Q02388 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL7A1Q02388 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL7A1Q02388 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL7A1Q02388 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL7A1Q02388 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL7A1Q02388 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
COL7A1Q02388 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL7A1Q02388 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL7A1Q02388 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
COL7A1Q02388 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms