Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLRN1P58418 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLRN1P58418 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLRN1P58418 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC18.7■□□□□ 0.58
CLRN1P58418 RNF146-206ENST00000480444 843 ntTSL 2 BASIC18.7■□□□□ 0.58
CLRN1P58418 LGR4-203ENST00000480977 492 ntTSL 2 BASIC18.7■□□□□ 0.58
CLRN1P58418 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC18.7■□□□□ 0.58
CLRN1P58418 PARN-205ENST00000539279 1557 ntTSL 2 BASIC18.7■□□□□ 0.58
CLRN1P58418 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLRN1P58418 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC18.7■□□□□ 0.58
CLRN1P58418 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLRN1P58418 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLRN1P58418 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
CLRN1P58418 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLRN1P58418 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC18.69■□□□□ 0.58
CLRN1P58418 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLRN1P58418 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC18.69■□□□□ 0.58
CLRN1P58418 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLRN1P58418 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CLRN1P58418 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC18.69■□□□□ 0.58
CLRN1P58418 PALM-208ENST00000592155 2272 ntTSL 4 BASIC18.69■□□□□ 0.58
CLRN1P58418 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLRN1P58418 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLRN1P58418 ZNRF2P3-201ENST00000424200 374 ntBASIC18.69■□□□□ 0.58
CLRN1P58418 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLRN1P58418 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
CLRN1P58418 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLRN1P58418 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CLRN1P58418 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLRN1P58418 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLRN1P58418 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLRN1P58418 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CLRN1P58418 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC18.68■□□□□ 0.58
CLRN1P58418 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CLRN1P58418 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLRN1P58418 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC18.68■□□□□ 0.58
CLRN1P58418 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLRN1P58418 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC18.68■□□□□ 0.58
CLRN1P58418 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CLRN1P58418 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLRN1P58418 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLRN1P58418 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CLRN1P58418 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLRN1P58418 GUK1-205ENST00000366722 850 ntTSL 3 BASIC18.68■□□□□ 0.58
CLRN1P58418 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLRN1P58418 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLRN1P58418 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC18.68■□□□□ 0.58
CLRN1P58418 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC18.68■□□□□ 0.58
CLRN1P58418 AC053503.5-201ENST00000601508 636 ntBASIC18.68■□□□□ 0.58
CLRN1P58418 SP2-202ENST00000613139 908 ntTSL 5 BASIC18.68■□□□□ 0.58
CLRN1P58418 KRT87P-202ENST00000534226 1464 ntBASIC18.68■□□□□ 0.58
CLRN1P58418 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLRN1P58418 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLRN1P58418 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLRN1P58418 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC18.68■□□□□ 0.58
CLRN1P58418 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC18.68■□□□□ 0.58
CLRN1P58418 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CLRN1P58418 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLRN1P58418 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLRN1P58418 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLRN1P58418 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC18.67■□□□□ 0.58
CLRN1P58418 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLRN1P58418 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLRN1P58418 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLRN1P58418 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CLRN1P58418 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLRN1P58418 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
CLRN1P58418 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CLRN1P58418 YBX1P1-201ENST00000445822 960 ntBASIC18.67■□□□□ 0.58
CLRN1P58418 EEF1DP3-203ENST00000566025 782 ntBASIC18.67■□□□□ 0.58
CLRN1P58418 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLRN1P58418 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC18.67■□□□□ 0.58
CLRN1P58418 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC18.67■□□□□ 0.58
CLRN1P58418 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
CLRN1P58418 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLRN1P58418 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC18.67■□□□□ 0.58
CLRN1P58418 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC18.66■□□□□ 0.58
CLRN1P58418 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLRN1P58418 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC18.66■□□□□ 0.58
CLRN1P58418 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC18.66■□□□□ 0.58
CLRN1P58418 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLRN1P58418 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLRN1P58418 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLRN1P58418 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
CLRN1P58418 AC123595.1-201ENST00000440769 1046 ntBASIC18.66■□□□□ 0.58
CLRN1P58418 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
CLRN1P58418 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC18.66■□□□□ 0.58
CLRN1P58418 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLRN1P58418 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLRN1P58418 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLRN1P58418 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLRN1P58418 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
CLRN1P58418 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLRN1P58418 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.65■□□□□ 0.58
CLRN1P58418 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLRN1P58418 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.65■□□□□ 0.58
CLRN1P58418 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLRN1P58418 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CLRN1P58418 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CLRN1P58418 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms