Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PKNOX1P55347 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PKNOX1P55347 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PKNOX1P55347 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.5■□□□□ 0.87
PKNOX1P55347 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PKNOX1P55347 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PKNOX1P55347 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.5■□□□□ 0.87
PKNOX1P55347 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PKNOX1P55347 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.5■□□□□ 0.87
PKNOX1P55347 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PKNOX1P55347 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PKNOX1P55347 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.5■□□□□ 0.87
PKNOX1P55347 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.5■□□□□ 0.87
PKNOX1P55347 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.5■□□□□ 0.87
PKNOX1P55347 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.5■□□□□ 0.87
PKNOX1P55347 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PKNOX1P55347 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PKNOX1P55347 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
PKNOX1P55347 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.5■□□□□ 0.87
PKNOX1P55347 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.5■□□□□ 0.87
PKNOX1P55347 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PKNOX1P55347 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PKNOX1P55347 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PKNOX1P55347 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.49■□□□□ 0.87
PKNOX1P55347 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PKNOX1P55347 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.49■□□□□ 0.87
PKNOX1P55347 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
PKNOX1P55347 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.49■□□□□ 0.87
PKNOX1P55347 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PKNOX1P55347 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.49■□□□□ 0.87
PKNOX1P55347 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PKNOX1P55347 AC009237.3-201ENST00000393279 1427 ntBASIC20.49■□□□□ 0.87
PKNOX1P55347 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.49■□□□□ 0.87
PKNOX1P55347 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PKNOX1P55347 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
PKNOX1P55347 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PKNOX1P55347 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
PKNOX1P55347 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
PKNOX1P55347 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PKNOX1P55347 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PKNOX1P55347 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PKNOX1P55347 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.48■□□□□ 0.87
PKNOX1P55347 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.48■□□□□ 0.87
PKNOX1P55347 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.48■□□□□ 0.87
PKNOX1P55347 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PKNOX1P55347 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PKNOX1P55347 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
PKNOX1P55347 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PKNOX1P55347 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
PKNOX1P55347 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
PKNOX1P55347 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.47■□□□□ 0.87
PKNOX1P55347 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PKNOX1P55347 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.47■□□□□ 0.87
PKNOX1P55347 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PKNOX1P55347 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
PKNOX1P55347 AC131212.1-201ENST00000613771 668 ntBASIC20.47■□□□□ 0.87
PKNOX1P55347 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PKNOX1P55347 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PKNOX1P55347 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.47■□□□□ 0.87
PKNOX1P55347 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
PKNOX1P55347 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PKNOX1P55347 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PKNOX1P55347 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
PKNOX1P55347 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PKNOX1P55347 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.46■□□□□ 0.87
PKNOX1P55347 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PKNOX1P55347 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PKNOX1P55347 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PKNOX1P55347 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.46■□□□□ 0.87
PKNOX1P55347 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PKNOX1P55347 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.46■□□□□ 0.87
PKNOX1P55347 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PKNOX1P55347 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.46■□□□□ 0.87
PKNOX1P55347 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.46■□□□□ 0.87
PKNOX1P55347 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PKNOX1P55347 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20.46■□□□□ 0.87
PKNOX1P55347 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.46■□□□□ 0.87
PKNOX1P55347 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.46■□□□□ 0.87
PKNOX1P55347 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
PKNOX1P55347 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PKNOX1P55347 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PKNOX1P55347 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.45■□□□□ 0.87
PKNOX1P55347 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PKNOX1P55347 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PKNOX1P55347 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
PKNOX1P55347 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
PKNOX1P55347 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PKNOX1P55347 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PKNOX1P55347 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.45■□□□□ 0.86
PKNOX1P55347 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
PKNOX1P55347 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PKNOX1P55347 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PKNOX1P55347 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
PKNOX1P55347 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
PKNOX1P55347 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.45■□□□□ 0.86
PKNOX1P55347 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PKNOX1P55347 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PKNOX1P55347 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
PKNOX1P55347 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.44■□□□□ 0.86
PKNOX1P55347 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms