Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
FOXA1P55317 AC006128.1-201ENST00000624704 1661 ntBASIC20.32■□□□□ 0.84
FOXA1P55317 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
FOXA1P55317 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
FOXA1P55317 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
FOXA1P55317 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
FOXA1P55317 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
FOXA1P55317 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
FOXA1P55317 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
FOXA1P55317 AC027682.1-201ENST00000562846 899 ntBASIC20.31■□□□□ 0.84
FOXA1P55317 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.31■□□□□ 0.84
FOXA1P55317 AC106739.1-201ENST00000617035 715 ntBASIC20.31■□□□□ 0.84
FOXA1P55317 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.31■□□□□ 0.84
FOXA1P55317 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
FOXA1P55317 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
FOXA1P55317 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.3■□□□□ 0.84
FOXA1P55317 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.3■□□□□ 0.84
FOXA1P55317 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
FOXA1P55317 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
FOXA1P55317 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
FOXA1P55317 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.3■□□□□ 0.84
FOXA1P55317 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
FOXA1P55317 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
FOXA1P55317 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
FOXA1P55317 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
FOXA1P55317 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
FOXA1P55317 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
FOXA1P55317 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
FOXA1P55317 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
FOXA1P55317 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.29■□□□□ 0.84
FOXA1P55317 AC110285.6-201ENST00000617652 491 ntBASIC20.29■□□□□ 0.84
FOXA1P55317 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
FOXA1P55317 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
FOXA1P55317 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
FOXA1P55317 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
FOXA1P55317 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
FOXA1P55317 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
FOXA1P55317 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
FOXA1P55317 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.29■□□□□ 0.84
FOXA1P55317 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.28■□□□□ 0.84
FOXA1P55317 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
FOXA1P55317 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
FOXA1P55317 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
FOXA1P55317 BX005040.4-201ENST00000637145 1518 ntBASIC20.28■□□□□ 0.84
FOXA1P55317 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.28■□□□□ 0.84
FOXA1P55317 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.28■□□□□ 0.84
FOXA1P55317 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
FOXA1P55317 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.28■□□□□ 0.84
FOXA1P55317 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
FOXA1P55317 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
FOXA1P55317 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.28■□□□□ 0.84
FOXA1P55317 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
FOXA1P55317 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
FOXA1P55317 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
FOXA1P55317 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.28■□□□□ 0.84
FOXA1P55317 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.28■□□□□ 0.84
FOXA1P55317 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.28■□□□□ 0.84
FOXA1P55317 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
FOXA1P55317 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
FOXA1P55317 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
FOXA1P55317 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
FOXA1P55317 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.27■□□□□ 0.84
FOXA1P55317 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
FOXA1P55317 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
FOXA1P55317 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
FOXA1P55317 AC073314.1-201ENST00000568729 2216 ntBASIC20.27■□□□□ 0.84
FOXA1P55317 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
FOXA1P55317 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
FOXA1P55317 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
FOXA1P55317 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.27■□□□□ 0.84
FOXA1P55317 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
FOXA1P55317 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
FOXA1P55317 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.27■□□□□ 0.84
FOXA1P55317 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
FOXA1P55317 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.27■□□□□ 0.84
FOXA1P55317 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
FOXA1P55317 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
FOXA1P55317 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
FOXA1P55317 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
FOXA1P55317 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.27■□□□□ 0.84
FOXA1P55317 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
FOXA1P55317 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
FOXA1P55317 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
FOXA1P55317 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
FOXA1P55317 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
FOXA1P55317 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
FOXA1P55317 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
FOXA1P55317 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.26■□□□□ 0.83
FOXA1P55317 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
FOXA1P55317 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
FOXA1P55317 EDA-201ENST00000338901 1233 ntBASIC20.26■□□□□ 0.83
FOXA1P55317 MIR572-201ENST00000384983 95 ntBASIC20.26■□□□□ 0.83
FOXA1P55317 MIR939-201ENST00000401314 82 ntBASIC20.26■□□□□ 0.83
FOXA1P55317 AF213884.3-201ENST00000563833 479 ntBASIC20.26■□□□□ 0.83
FOXA1P55317 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.26■□□□□ 0.83
FOXA1P55317 AL031432.3-201ENST00000607698 485 ntBASIC20.26■□□□□ 0.83
FOXA1P55317 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
FOXA1P55317 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
FOXA1P55317 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
FOXA1P55317 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms