Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC18.39■□□□□ 0.54
CX3CR1P49238 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CX3CR1P49238 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CX3CR1P49238 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CX3CR1P49238 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CX3CR1P49238 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC18.39■□□□□ 0.53
CX3CR1P49238 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CX3CR1P49238 FXN-202ENST00000396364 980 ntTSL 5 BASIC18.39■□□□□ 0.53
CX3CR1P49238 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CX3CR1P49238 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
CX3CR1P49238 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC18.39■□□□□ 0.53
CX3CR1P49238 NARF-205ENST00000412079 1760 ntTSL 5 BASIC18.39■□□□□ 0.53
CX3CR1P49238 AL049796.1-201ENST00000565336 1766 ntBASIC18.39■□□□□ 0.53
CX3CR1P49238 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CX3CR1P49238 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC18.39■□□□□ 0.53
CX3CR1P49238 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CX3CR1P49238 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CX3CR1P49238 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
CX3CR1P49238 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CX3CR1P49238 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CX3CR1P49238 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
CX3CR1P49238 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
CX3CR1P49238 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CX3CR1P49238 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CX3CR1P49238 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC18.38■□□□□ 0.53
CX3CR1P49238 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC18.38■□□□□ 0.53
CX3CR1P49238 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC18.38■□□□□ 0.53
CX3CR1P49238 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CX3CR1P49238 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CX3CR1P49238 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CX3CR1P49238 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CX3CR1P49238 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC18.37■□□□□ 0.53
CX3CR1P49238 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC18.37■□□□□ 0.53
CX3CR1P49238 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC18.37■□□□□ 0.53
CX3CR1P49238 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC18.37■□□□□ 0.53
CX3CR1P49238 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CX3CR1P49238 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CX3CR1P49238 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CX3CR1P49238 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CX3CR1P49238 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CX3CR1P49238 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
CX3CR1P49238 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC18.37■□□□□ 0.53
CX3CR1P49238 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC18.37■□□□□ 0.53
CX3CR1P49238 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CX3CR1P49238 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CX3CR1P49238 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC18.37■□□□□ 0.53
CX3CR1P49238 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CX3CR1P49238 STX5-203ENST00000394690 1568 ntTSL 5 BASIC18.37■□□□□ 0.53
CX3CR1P49238 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CX3CR1P49238 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CX3CR1P49238 AC073130.3-201ENST00000624389 2278 ntBASIC18.37■□□□□ 0.53
CX3CR1P49238 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CX3CR1P49238 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CX3CR1P49238 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CX3CR1P49238 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CX3CR1P49238 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CX3CR1P49238 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC18.36■□□□□ 0.53
CX3CR1P49238 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CX3CR1P49238 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC18.36■□□□□ 0.53
CX3CR1P49238 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CX3CR1P49238 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CX3CR1P49238 MPST-204ENST00000404393 1329 ntTSL 5 BASIC18.36■□□□□ 0.53
CX3CR1P49238 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC18.36■□□□□ 0.53
CX3CR1P49238 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC18.36■□□□□ 0.53
CX3CR1P49238 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC18.36■□□□□ 0.53
CX3CR1P49238 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC18.36■□□□□ 0.53
CX3CR1P49238 SUDS3P1-201ENST00000505831 966 ntBASIC18.36■□□□□ 0.53
CX3CR1P49238 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC18.36■□□□□ 0.53
CX3CR1P49238 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
CX3CR1P49238 PALM-207ENST00000590161 2137 ntTSL 4 BASIC18.36■□□□□ 0.53
CX3CR1P49238 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC18.36■□□□□ 0.53
CX3CR1P49238 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CX3CR1P49238 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CX3CR1P49238 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CX3CR1P49238 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CX3CR1P49238 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CX3CR1P49238 AC142381.2-201ENST00000566120 298 ntBASIC18.35■□□□□ 0.53
CX3CR1P49238 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CX3CR1P49238 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CX3CR1P49238 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CX3CR1P49238 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CX3CR1P49238 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CX3CR1P49238 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CX3CR1P49238 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CX3CR1P49238 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CX3CR1P49238 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CX3CR1P49238 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CX3CR1P49238 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CX3CR1P49238 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CX3CR1P49238 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC18.34■□□□□ 0.53
CX3CR1P49238 AC012414.1-201ENST00000556676 535 ntBASIC18.34■□□□□ 0.53
CX3CR1P49238 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC18.34■□□□□ 0.53
CX3CR1P49238 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC18.34■□□□□ 0.53
CX3CR1P49238 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CX3CR1P49238 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CX3CR1P49238 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CX3CR1P49238 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC18.34■□□□□ 0.53
CX3CR1P49238 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
CX3CR1P49238 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC18.34■□□□□ 0.53
CX3CR1P49238 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.33■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms