Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
CDX1P47902 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CDX1P47902 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC16.99■□□□□ 0.31
CDX1P47902 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDX1P47902 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC16.99■□□□□ 0.31
CDX1P47902 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDX1P47902 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDX1P47902 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDX1P47902 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC16.98■□□□□ 0.31
CDX1P47902 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
CDX1P47902 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDX1P47902 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDX1P47902 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDX1P47902 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDX1P47902 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC16.98■□□□□ 0.31
CDX1P47902 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDX1P47902 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDX1P47902 EI24-211ENST00000534546 1544 ntTSL 2 BASIC16.98■□□□□ 0.31
CDX1P47902 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDX1P47902 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDX1P47902 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC16.98■□□□□ 0.31
CDX1P47902 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC16.98■□□□□ 0.31
CDX1P47902 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CDX1P47902 SP2-202ENST00000613139 908 ntTSL 5 BASIC16.98■□□□□ 0.31
CDX1P47902 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CDX1P47902 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDX1P47902 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
CDX1P47902 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDX1P47902 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDX1P47902 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
CDX1P47902 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CDX1P47902 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CDX1P47902 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CDX1P47902 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CDX1P47902 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CDX1P47902 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC16.97■□□□□ 0.31
CDX1P47902 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CDX1P47902 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC16.97■□□□□ 0.31
CDX1P47902 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CDX1P47902 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.31
CDX1P47902 AC027612.3-201ENST00000413684 1047 ntBASIC16.97■□□□□ 0.31
CDX1P47902 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CDX1P47902 AC010141.3-201ENST00000456659 717 ntBASIC16.97■□□□□ 0.31
CDX1P47902 PLD4-205ENST00000553861 667 ntTSL 2 BASIC16.97■□□□□ 0.31
CDX1P47902 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC16.97■□□□□ 0.31
CDX1P47902 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
CDX1P47902 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
CDX1P47902 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CDX1P47902 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
CDX1P47902 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CDX1P47902 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CDX1P47902 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CDX1P47902 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CDX1P47902 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CDX1P47902 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CDX1P47902 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CDX1P47902 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CDX1P47902 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CDX1P47902 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CDX1P47902 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CDX1P47902 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC16.96■□□□□ 0.31
CDX1P47902 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CDX1P47902 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CDX1P47902 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC16.96■□□□□ 0.31
CDX1P47902 AC123595.1-201ENST00000440769 1046 ntBASIC16.96■□□□□ 0.31
CDX1P47902 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CDX1P47902 YBX1P1-201ENST00000445822 960 ntBASIC16.96■□□□□ 0.31
CDX1P47902 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC16.96■□□□□ 0.31
CDX1P47902 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC16.96■□□□□ 0.31
CDX1P47902 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC16.96■□□□□ 0.31
CDX1P47902 AC105233.4-201ENST00000642045 216 ntBASIC16.96■□□□□ 0.31
CDX1P47902 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CDX1P47902 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CDX1P47902 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC16.96■□□□□ 0.31
CDX1P47902 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CDX1P47902 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CDX1P47902 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
CDX1P47902 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
CDX1P47902 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
CDX1P47902 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC16.96■□□□□ 0.3
CDX1P47902 MPST-204ENST00000404393 1329 ntTSL 5 BASIC16.96■□□□□ 0.3
CDX1P47902 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CDX1P47902 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CDX1P47902 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CDX1P47902 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CDX1P47902 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC16.95■□□□□ 0.3
CDX1P47902 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC16.95■□□□□ 0.3
CDX1P47902 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC16.95■□□□□ 0.3
CDX1P47902 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CDX1P47902 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
CDX1P47902 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CDX1P47902 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC16.95■□□□□ 0.3
CDX1P47902 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CDX1P47902 USP45-205ENST00000472914 1617 ntTSL 5 BASIC16.95■□□□□ 0.3
CDX1P47902 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CDX1P47902 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CDX1P47902 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
CDX1P47902 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CDX1P47902 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CDX1P47902 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms