Protein–RNA interactions for Protein: P41817

CUP9, Homeobox protein CUP9, yeastyeast

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CUP9P41817 DUO1YGL061C 744 nt2.09□□□□□ -2.07
CUP9P41817 BAT1YHR208W 1182 nt2.09□□□□□ -2.07
CUP9P41817 YIL024CYIL024C 570 nt2.09□□□□□ -2.07
CUP9P41817 DAD2YKR083C 402 nt2.09□□□□□ -2.07
CUP9P41817 YLR154W-EYLR154W-E 204 nt2.09□□□□□ -2.07
CUP9P41817 ICY1YMR195W 384 nt2.09□□□□□ -2.07
CUP9P41817 YNL043CYNL043C 321 nt2.09□□□□□ -2.07
CUP9P41817 TRM112YNR046W 408 nt2.09□□□□□ -2.07
CUP9P41817 RFC5YBR087W 1065 nt2.09□□□□□ -2.07
CUP9P41817 YBR209WYBR209W 318 nt2.09□□□□□ -2.07
CUP9P41817 MRPL27YBR282W 441 nt2.09□□□□□ -2.07
CUP9P41817 ISW1YBR245C 3390 nt2.09□□□□□ -2.08
CUP9P41817 SIR3YLR442C 2937 nt2.09□□□□□ -2.08
CUP9P41817 YKU80YMR106C 1890 nt2.09□□□□□ -2.08
CUP9P41817 CET1YPL228W 1650 nt2.09□□□□□ -2.08
CUP9P41817 PKP2YGL059W 1476 nt2.08□□□□□ -2.08
CUP9P41817 YKR078WYKR078W 1758 nt2.08□□□□□ -2.08
CUP9P41817 SEC16YPL085W 6588 nt2.08□□□□□ -2.08
CUP9P41817 RTT105YER104W 627 nt2.08□□□□□ -2.08
CUP9P41817 MRPL6YHR147C 645 nt2.08□□□□□ -2.08
CUP9P41817 RPC17YJL011C 486 nt2.08□□□□□ -2.08
CUP9P41817 ATP7YKL016C 525 nt2.08□□□□□ -2.08
CUP9P41817 AI2Q0055 2565 nt2.08□□□□□ -2.08
CUP9P41817 YCK2YNL154C 1641 nt2.08□□□□□ -2.08
CUP9P41817 STI1YOR027W 1770 nt2.08□□□□□ -2.08
CUP9P41817 SMY2YBR172C 2223 nt2.07□□□□□ -2.08
CUP9P41817 MLH1YMR167W 2310 nt2.07□□□□□ -2.08
CUP9P41817 INP53YOR109W 3324 nt2.07□□□□□ -2.08
CUP9P41817 RPS24AYER074W 408 nt2.07□□□□□ -2.08
CUP9P41817 BRR6YGL247W 594 nt2.07□□□□□ -2.08
CUP9P41817 YGR114CYGR114C 390 nt2.07□□□□□ -2.08
CUP9P41817 MST28YAR033W 705 nt2.07□□□□□ -2.08
CUP9P41817 VMA6YLR447C 1038 nt2.07□□□□□ -2.08
CUP9P41817 RRG7YOR305W 729 nt2.07□□□□□ -2.08
CUP9P41817 POL30YBR088C 777 nt2.07□□□□□ -2.08
CUP9P41817 SWD3YBR175W 948 nt2.07□□□□□ -2.08
CUP9P41817 TOP2YNL088W 4287 nt2.07□□□□□ -2.08
CUP9P41817 SSY1YDR160W 2559 nt2.07□□□□□ -2.08
CUP9P41817 YBL005W-AYBL005W-A 1323 nt2.07□□□□□ -2.08
CUP9P41817 YMR046CYMR046C 1323 nt2.07□□□□□ -2.08
CUP9P41817 VPS9YML097C 1356 nt2.07□□□□□ -2.08
CUP9P41817 EAP1YKL204W 1899 nt2.07□□□□□ -2.08
CUP9P41817 PUT3YKL015W 2940 nt2.07□□□□□ -2.08
CUP9P41817 SAP190YKR028W 3102 nt2.06□□□□□ -2.08
CUP9P41817 SAK1YER129W 3429 nt2.06□□□□□ -2.08
CUP9P41817 YER079C-AYER079C-A 339 nt2.06□□□□□ -2.08
CUP9P41817 SCL1YGL011C 759 nt2.06□□□□□ -2.08
CUP9P41817 VEL1YGL258W 621 nt2.06□□□□□ -2.08
CUP9P41817 TCD1YHR003C 1290 nt2.06□□□□□ -2.08
CUP9P41817 BET3YKR068C 582 nt2.06□□□□□ -2.08
CUP9P41817 THI80YOR143C 960 nt2.06□□□□□ -2.08
CUP9P41817 ATP3YBR039W 936 nt2.06□□□□□ -2.08
CUP9P41817 SKO1YNL167C 1944 nt2.06□□□□□ -2.08
CUP9P41817 21S_rRNA21S_rRNA 3296 nt2.06□□□□□ -2.08
CUP9P41817 MAK11YKL021C 1407 nt2.06□□□□□ -2.08
CUP9P41817 UTP15YMR093W 1542 nt2.06□□□□□ -2.08
CUP9P41817 SPH1YLR313C 1593 nt2.06□□□□□ -2.08
CUP9P41817 SVL3YPL032C 2478 nt2.06□□□□□ -2.08
CUP9P41817 PHO2YDL106C 1680 nt2.06□□□□□ -2.08
CUP9P41817 TMA64YDR117C 1698 nt2.06□□□□□ -2.08
CUP9P41817 YEF3YLR249W 3135 nt2.05□□□□□ -2.08
CUP9P41817 TSC13YDL015C 933 nt2.05□□□□□ -2.08
CUP9P41817 YDR222WYDR222W 1248 nt2.05□□□□□ -2.08
CUP9P41817 RNH202YDR279W 1053 nt2.05□□□□□ -2.08
CUP9P41817 PRE4YFR050C 801 nt2.05□□□□□ -2.08
CUP9P41817 MRPL9YGR220C 810 nt2.05□□□□□ -2.08
CUP9P41817 YHL006W-AYHL006W-A 354 nt2.05□□□□□ -2.08
CUP9P41817 SAS2YMR127C 1017 nt2.05□□□□□ -2.08
CUP9P41817 KTI11YBL071W-A 249 nt2.05□□□□□ -2.08
CUP9P41817 RBL2YOR265W 321 nt2.05□□□□□ -2.08
CUP9P41817 POS5YPL188W 1245 nt2.05□□□□□ -2.08
CUP9P41817 PIS1YPR113W 663 nt2.05□□□□□ -2.08
CUP9P41817 YCL023CYCL023C 348 nt2.05□□□□□ -2.08
CUP9P41817 SUL1YBR294W 2580 nt2.05□□□□□ -2.08
CUP9P41817 ORC2YBR060C 1863 nt2.05□□□□□ -2.08
CUP9P41817 MPS1YDL028C 2295 nt2.05□□□□□ -2.08
CUP9P41817 YIL080WYIL080W 4722 nt2.04□□□□□ -2.08
CUP9P41817 YCR015CYCR015C 954 nt2.04□□□□□ -2.08
CUP9P41817 YDR535CYDR535C 501 nt2.04□□□□□ -2.08
CUP9P41817 ERG25YGR060W 930 nt2.04□□□□□ -2.08
CUP9P41817 SOL3YHR163W 750 nt2.04□□□□□ -2.08
CUP9P41817 SSQ1YLR369W 1974 nt2.04□□□□□ -2.08
CUP9P41817 PSY3YLR376C 729 nt2.04□□□□□ -2.08
CUP9P41817 GAB1YLR459W 1185 nt2.04□□□□□ -2.08
CUP9P41817 YNL035CYNL035C 1170 nt2.04□□□□□ -2.08
CUP9P41817 NUF2YOL069W 1356 nt2.04□□□□□ -2.08
CUP9P41817 YSA1YBR111C 696 nt2.04□□□□□ -2.08
CUP9P41817 SPB1YCL054W 2526 nt2.04□□□□□ -2.08
CUP9P41817 YDR261W-BYDR261W-B 5313 nt2.03□□□□□ -2.08
CUP9P41817 YFL002W-AYFL002W-A 5313 nt2.03□□□□□ -2.08
CUP9P41817 YGR161W-BYGR161W-B 5313 nt2.03□□□□□ -2.08
CUP9P41817 YCL019WYCL019W 5313 nt2.03□□□□□ -2.08
CUP9P41817 YGL176CYGL176C 1665 nt2.03□□□□□ -2.08
CUP9P41817 CAJ1YER048C 1176 nt2.03□□□□□ -2.08
CUP9P41817 YGL138CYGL138C 1038 nt2.03□□□□□ -2.08
CUP9P41817 VPS51YKR020W 495 nt2.03□□□□□ -2.08
CUP9P41817 AIM32YML050W 936 nt2.03□□□□□ -2.08
CUP9P41817 SUB1YMR039C 879 nt2.03□□□□□ -2.08
CUP9P41817 GUP1YGL084C 1683 nt2.02□□□□□ -2.09
CUP9P41817 ARI1YGL157W 1044 nt2.02□□□□□ -2.09
Retrieved 100 of 7,029 protein–RNA pairs in 35.2 ms