Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CDH3P22223 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.47■□□□□ 0.87
CDH3P22223 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CDH3P22223 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CDH3P22223 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.46■□□□□ 0.87
CDH3P22223 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CDH3P22223 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.46■□□□□ 0.87
CDH3P22223 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CDH3P22223 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CDH3P22223 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.46■□□□□ 0.87
CDH3P22223 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.46■□□□□ 0.87
CDH3P22223 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.46■□□□□ 0.87
CDH3P22223 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.46■□□□□ 0.87
CDH3P22223 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.46■□□□□ 0.87
CDH3P22223 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CDH3P22223 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
CDH3P22223 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CDH3P22223 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC20.46■□□□□ 0.87
CDH3P22223 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.46■□□□□ 0.87
CDH3P22223 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
CDH3P22223 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.46■□□□□ 0.87
CDH3P22223 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CDH3P22223 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CDH3P22223 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.46■□□□□ 0.87
CDH3P22223 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CDH3P22223 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CDH3P22223 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
CDH3P22223 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDH3P22223 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
CDH3P22223 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDH3P22223 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.45■□□□□ 0.86
CDH3P22223 ECEL1P1-201ENST00000373592 1742 ntBASIC20.45■□□□□ 0.86
CDH3P22223 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CDH3P22223 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDH3P22223 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
CDH3P22223 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDH3P22223 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDH3P22223 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC20.45■□□□□ 0.86
CDH3P22223 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.45■□□□□ 0.86
CDH3P22223 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDH3P22223 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CDH3P22223 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CDH3P22223 AC080038.1-201ENST00000611274 1154 ntBASIC20.45■□□□□ 0.86
CDH3P22223 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
CDH3P22223 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDH3P22223 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC20.45■□□□□ 0.86
CDH3P22223 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.45■□□□□ 0.86
CDH3P22223 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDH3P22223 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CDH3P22223 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CDH3P22223 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CDH3P22223 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CDH3P22223 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CDH3P22223 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.44■□□□□ 0.86
CDH3P22223 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CDH3P22223 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CDH3P22223 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC20.44■□□□□ 0.86
CDH3P22223 AC138907.5-202ENST00000569484 235 ntBASIC20.44■□□□□ 0.86
CDH3P22223 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20.44■□□□□ 0.86
CDH3P22223 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.44■□□□□ 0.86
CDH3P22223 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.44■□□□□ 0.86
CDH3P22223 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CDH3P22223 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
CDH3P22223 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.44■□□□□ 0.86
CDH3P22223 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
CDH3P22223 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CDH3P22223 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.43■□□□□ 0.86
CDH3P22223 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.43■□□□□ 0.86
CDH3P22223 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDH3P22223 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.43■□□□□ 0.86
CDH3P22223 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDH3P22223 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDH3P22223 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDH3P22223 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.43■□□□□ 0.86
CDH3P22223 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CDH3P22223 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.43■□□□□ 0.86
CDH3P22223 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CDH3P22223 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDH3P22223 AC010141.2-201ENST00000452426 721 ntBASIC20.43■□□□□ 0.86
CDH3P22223 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDH3P22223 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CDH3P22223 EEF1DP3-203ENST00000566025 782 ntBASIC20.43■□□□□ 0.86
CDH3P22223 AC053503.5-201ENST00000601508 636 ntBASIC20.43■□□□□ 0.86
CDH3P22223 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDH3P22223 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.43■□□□□ 0.86
CDH3P22223 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CDH3P22223 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
CDH3P22223 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CDH3P22223 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.42■□□□□ 0.86
CDH3P22223 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CDH3P22223 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CDH3P22223 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CDH3P22223 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
CDH3P22223 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
CDH3P22223 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.42■□□□□ 0.86
CDH3P22223 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CDH3P22223 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.42■□□□□ 0.86
CDH3P22223 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CDH3P22223 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CDH3P22223 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms