Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21■□□□□ 0.95
VIMP08670 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
VIMP08670 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC21■□□□□ 0.95
VIMP08670 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC21■□□□□ 0.95
VIMP08670 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
VIMP08670 AL020996.1-203ENST00000536896 2307 ntBASIC21■□□□□ 0.95
VIMP08670 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
VIMP08670 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VIMP08670 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21■□□□□ 0.95
VIMP08670 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC21■□□□□ 0.95
VIMP08670 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
VIMP08670 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC21■□□□□ 0.95
VIMP08670 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
VIMP08670 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
VIMP08670 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC21■□□□□ 0.95
VIMP08670 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC21■□□□□ 0.95
VIMP08670 PALM-207ENST00000590161 2137 ntTSL 4 BASIC21■□□□□ 0.95
VIMP08670 NTF6A-201ENST00000591175 560 ntBASIC21■□□□□ 0.95
VIMP08670 PVT1_1.1-201ENST00000615125 194 ntBASIC21■□□□□ 0.95
VIMP08670 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VIMP08670 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VIMP08670 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VIMP08670 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
VIMP08670 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
VIMP08670 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
VIMP08670 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
VIMP08670 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VIMP08670 PLK5-205ENST00000642079 1969 ntBASIC20.99■□□□□ 0.95
VIMP08670 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
VIMP08670 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VIMP08670 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
VIMP08670 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
VIMP08670 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
VIMP08670 MIR6722-201ENST00000617286 78 ntBASIC20.99■□□□□ 0.95
VIMP08670 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
VIMP08670 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VIMP08670 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VIMP08670 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.99■□□□□ 0.95
VIMP08670 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
VIMP08670 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
VIMP08670 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VIMP08670 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VIMP08670 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
VIMP08670 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
VIMP08670 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.98■□□□□ 0.95
VIMP08670 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VIMP08670 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.98■□□□□ 0.95
VIMP08670 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
VIMP08670 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
VIMP08670 SENP5-202ENST00000419026 973 ntTSL 3 BASIC20.98■□□□□ 0.95
VIMP08670 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
VIMP08670 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
VIMP08670 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
VIMP08670 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.97■□□□□ 0.95
VIMP08670 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VIMP08670 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VIMP08670 AC009102.2-201ENST00000606772 1639 ntBASIC20.97■□□□□ 0.95
VIMP08670 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VIMP08670 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.97■□□□□ 0.95
VIMP08670 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC20.97■□□□□ 0.95
VIMP08670 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC20.97■□□□□ 0.95
VIMP08670 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VIMP08670 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
VIMP08670 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VIMP08670 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
VIMP08670 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
VIMP08670 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VIMP08670 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
VIMP08670 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.96■□□□□ 0.95
VIMP08670 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.96■□□□□ 0.95
VIMP08670 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.96■□□□□ 0.95
VIMP08670 AC112907.3-201ENST00000577781 2400 ntBASIC20.96■□□□□ 0.95
VIMP08670 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
VIMP08670 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VIMP08670 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VIMP08670 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.96■□□□□ 0.95
VIMP08670 AC027702.1-201ENST00000563810 1770 ntBASIC20.96■□□□□ 0.95
VIMP08670 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.96■□□□□ 0.95
VIMP08670 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VIMP08670 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC20.96■□□□□ 0.95
VIMP08670 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VIMP08670 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VIMP08670 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VIMP08670 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VIMP08670 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VIMP08670 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.95
VIMP08670 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.95
VIMP08670 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.95■□□□□ 0.94
VIMP08670 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.95■□□□□ 0.94
VIMP08670 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
VIMP08670 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
VIMP08670 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.95■□□□□ 0.94
VIMP08670 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC20.95■□□□□ 0.94
VIMP08670 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
VIMP08670 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
VIMP08670 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VIMP08670 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC20.95■□□□□ 0.94
VIMP08670 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC20.95■□□□□ 0.94
VIMP08670 AL031602.1-201ENST00000633169 911 ntBASIC20.95■□□□□ 0.94
VIMP08670 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms