Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
LDLRP01130 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
LDLRP01130 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
LDLRP01130 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.14■□□□□ 0.81
LDLRP01130 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.81
LDLRP01130 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.14■□□□□ 0.81
LDLRP01130 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.14■□□□□ 0.81
LDLRP01130 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
LDLRP01130 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.14■□□□□ 0.81
LDLRP01130 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.13■□□□□ 0.81
LDLRP01130 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
LDLRP01130 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
LDLRP01130 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
LDLRP01130 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
LDLRP01130 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
LDLRP01130 AC004687.1-201ENST00000579003 1625 ntBASIC20.13■□□□□ 0.81
LDLRP01130 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
LDLRP01130 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
LDLRP01130 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
LDLRP01130 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.13■□□□□ 0.81
LDLRP01130 ME3-201ENST00000323418 1068 ntTSL 5 BASIC20.13■□□□□ 0.81
LDLRP01130 AC012414.1-201ENST00000556676 535 ntBASIC20.13■□□□□ 0.81
LDLRP01130 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
LDLRP01130 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
LDLRP01130 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.13■□□□□ 0.81
LDLRP01130 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
LDLRP01130 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
LDLRP01130 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
LDLRP01130 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
LDLRP01130 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
LDLRP01130 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC20.12■□□□□ 0.81
LDLRP01130 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
LDLRP01130 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
LDLRP01130 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
LDLRP01130 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
LDLRP01130 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
LDLRP01130 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
LDLRP01130 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
LDLRP01130 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
LDLRP01130 MIR572-201ENST00000384983 95 ntBASIC20.12■□□□□ 0.81
LDLRP01130 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.12■□□□□ 0.81
LDLRP01130 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
LDLRP01130 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
LDLRP01130 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
LDLRP01130 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.12■□□□□ 0.81
LDLRP01130 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
LDLRP01130 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.12■□□□□ 0.81
LDLRP01130 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
LDLRP01130 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.12■□□□□ 0.81
LDLRP01130 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.12■□□□□ 0.81
LDLRP01130 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
LDLRP01130 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.12■□□□□ 0.81
LDLRP01130 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
LDLRP01130 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LDLRP01130 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.11■□□□□ 0.81
LDLRP01130 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.11■□□□□ 0.81
LDLRP01130 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
LDLRP01130 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
LDLRP01130 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
LDLRP01130 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.11■□□□□ 0.81
LDLRP01130 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.11■□□□□ 0.81
LDLRP01130 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LDLRP01130 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LDLRP01130 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.11■□□□□ 0.81
LDLRP01130 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
LDLRP01130 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LDLRP01130 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.11■□□□□ 0.81
LDLRP01130 TK2-208ENST00000545043 1120 ntTSL 2 BASIC20.11■□□□□ 0.81
LDLRP01130 AL354811.1-201ENST00000610286 706 ntBASIC20.11■□□□□ 0.81
LDLRP01130 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.11■□□□□ 0.81
LDLRP01130 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
LDLRP01130 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LDLRP01130 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
LDLRP01130 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LDLRP01130 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
LDLRP01130 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
LDLRP01130 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.1■□□□□ 0.81
LDLRP01130 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LDLRP01130 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
LDLRP01130 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LDLRP01130 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
LDLRP01130 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LDLRP01130 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
LDLRP01130 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC20.1■□□□□ 0.81
LDLRP01130 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
LDLRP01130 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC20.1■□□□□ 0.81
LDLRP01130 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
LDLRP01130 IGHV3-19-201ENST00000521488 291 ntBASIC20.1■□□□□ 0.81
LDLRP01130 KRT18P14-201ENST00000534205 1250 ntBASIC20.1■□□□□ 0.81
LDLRP01130 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
LDLRP01130 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.1■□□□□ 0.81
LDLRP01130 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LDLRP01130 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.09■□□□□ 0.81
LDLRP01130 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
LDLRP01130 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.09■□□□□ 0.81
LDLRP01130 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LDLRP01130 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.09■□□□□ 0.81
LDLRP01130 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC20.09■□□□□ 0.81
LDLRP01130 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC20.09■□□□□ 0.81
LDLRP01130 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms