Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC24.33■■□□□ 1.49
PRPF40AO75400 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC24.33■■□□□ 1.49
PRPF40AO75400 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC24.33■■□□□ 1.49
PRPF40AO75400 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
PRPF40AO75400 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC24.33■■□□□ 1.49
PRPF40AO75400 AC010141.3-201ENST00000456659 717 ntBASIC24.33■■□□□ 1.49
PRPF40AO75400 QDPR-206ENST00000508623 601 ntTSL 3 BASIC24.33■■□□□ 1.49
PRPF40AO75400 MIR4466-201ENST00000606121 54 ntBASIC24.33■■□□□ 1.49
PRPF40AO75400 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
PRPF40AO75400 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC24.33■■□□□ 1.49
PRPF40AO75400 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
PRPF40AO75400 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
PRPF40AO75400 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC24.33■■□□□ 1.48
PRPF40AO75400 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC24.33■■□□□ 1.48
PRPF40AO75400 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC24.33■■□□□ 1.48
PRPF40AO75400 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC24.33■■□□□ 1.48
PRPF40AO75400 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.48
PRPF40AO75400 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
PRPF40AO75400 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.48
PRPF40AO75400 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC24.33■■□□□ 1.48
PRPF40AO75400 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC24.33■■□□□ 1.48
PRPF40AO75400 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
PRPF40AO75400 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC24.32■■□□□ 1.48
PRPF40AO75400 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC24.32■■□□□ 1.48
PRPF40AO75400 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
PRPF40AO75400 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
PRPF40AO75400 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
PRPF40AO75400 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC24.32■■□□□ 1.48
PRPF40AO75400 AC099791.2-201ENST00000605725 427 ntBASIC24.32■■□□□ 1.48
PRPF40AO75400 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
PRPF40AO75400 ADM-207ENST00000530439 1839 ntTSL 2 BASIC24.32■■□□□ 1.48
PRPF40AO75400 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
PRPF40AO75400 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
PRPF40AO75400 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
PRPF40AO75400 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC24.32■■□□□ 1.48
PRPF40AO75400 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC24.31■■□□□ 1.48
PRPF40AO75400 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC24.31■■□□□ 1.48
PRPF40AO75400 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
PRPF40AO75400 GATM-206ENST00000558336 1522 ntTSL 2 BASIC24.31■■□□□ 1.48
PRPF40AO75400 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
PRPF40AO75400 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC24.31■■□□□ 1.48
PRPF40AO75400 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
PRPF40AO75400 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC24.31■■□□□ 1.48
PRPF40AO75400 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC24.31■■□□□ 1.48
PRPF40AO75400 SRD5A1P1-201ENST00000442297 786 ntBASIC24.31■■□□□ 1.48
PRPF40AO75400 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC24.31■■□□□ 1.48
PRPF40AO75400 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC24.31■■□□□ 1.48
PRPF40AO75400 AC087239.1-201ENST00000622671 572 ntBASIC24.31■■□□□ 1.48
PRPF40AO75400 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
PRPF40AO75400 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
PRPF40AO75400 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
PRPF40AO75400 AP004607.7-201ENST00000527152 1677 ntBASIC24.3■■□□□ 1.48
PRPF40AO75400 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC24.3■■□□□ 1.48
PRPF40AO75400 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC24.3■■□□□ 1.48
PRPF40AO75400 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PRPF40AO75400 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PRPF40AO75400 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC24.3■■□□□ 1.48
PRPF40AO75400 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC24.3■■□□□ 1.48
PRPF40AO75400 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PRPF40AO75400 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC24.3■■□□□ 1.48
PRPF40AO75400 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
PRPF40AO75400 ME2-218ENST00000640965 2476 ntTSL 5 BASIC24.3■■□□□ 1.48
PRPF40AO75400 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PRPF40AO75400 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PRPF40AO75400 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PRPF40AO75400 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PRPF40AO75400 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PRPF40AO75400 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PRPF40AO75400 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
PRPF40AO75400 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PRPF40AO75400 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
PRPF40AO75400 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC24.29■■□□□ 1.48
PRPF40AO75400 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC24.29■■□□□ 1.48
PRPF40AO75400 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
PRPF40AO75400 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC24.29■■□□□ 1.48
PRPF40AO75400 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC24.29■■□□□ 1.48
PRPF40AO75400 MIR3181-201ENST00000578512 73 ntBASIC24.29■■□□□ 1.48
PRPF40AO75400 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
PRPF40AO75400 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
PRPF40AO75400 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC24.29■■□□□ 1.48
PRPF40AO75400 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
PRPF40AO75400 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
PRPF40AO75400 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC24.28■■□□□ 1.48
PRPF40AO75400 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
PRPF40AO75400 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
PRPF40AO75400 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC24.28■■□□□ 1.48
PRPF40AO75400 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC24.28■■□□□ 1.48
PRPF40AO75400 OR2I1P-207ENST00000453522 948 ntBASIC24.28■■□□□ 1.48
PRPF40AO75400 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
PRPF40AO75400 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC24.28■■□□□ 1.48
PRPF40AO75400 AC010525.1-201ENST00000585559 441 ntBASIC24.28■■□□□ 1.48
PRPF40AO75400 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
PRPF40AO75400 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC24.28■■□□□ 1.48
PRPF40AO75400 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC24.28■■□□□ 1.48
PRPF40AO75400 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
PRPF40AO75400 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC24.28■■□□□ 1.48
PRPF40AO75400 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
PRPF40AO75400 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
PRPF40AO75400 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC24.27■■□□□ 1.48
PRPF40AO75400 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC24.27■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms