Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC36.41■■■■□ 3.42
CUX2O14529 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC36.4■■■■□ 3.42
CUX2O14529 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC36.4■■■■□ 3.42
CUX2O14529 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC36.4■■■■□ 3.42
CUX2O14529 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC36.4■■■■□ 3.42
CUX2O14529 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC36.4■■■■□ 3.42
CUX2O14529 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC36.4■■■■□ 3.42
CUX2O14529 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC36.4■■■■□ 3.42
CUX2O14529 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC36.4■■■■□ 3.42
CUX2O14529 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC36.4■■■■□ 3.42
CUX2O14529 AC006557.6-201ENST00000623071 864 ntBASIC36.4■■■■□ 3.42
CUX2O14529 AL355472.2-201ENST00000422958 438 ntBASIC36.39■■■■□ 3.42
CUX2O14529 KRT126P-201ENST00000549467 1181 ntBASIC36.39■■■■□ 3.42
CUX2O14529 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC36.39■■■■□ 3.42
CUX2O14529 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC36.39■■■■□ 3.42
CUX2O14529 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC36.39■■■■□ 3.42
CUX2O14529 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC36.38■■■■□ 3.42
CUX2O14529 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC36.38■■■■□ 3.41
CUX2O14529 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC36.38■■■■□ 3.41
CUX2O14529 KRT18P57-201ENST00000443599 1254 ntBASIC36.38■■■■□ 3.41
CUX2O14529 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC36.38■■■■□ 3.41
CUX2O14529 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC36.38■■■■□ 3.41
CUX2O14529 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC36.38■■■■□ 3.41
CUX2O14529 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC36.37■■■■□ 3.41
CUX2O14529 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC36.37■■■■□ 3.41
CUX2O14529 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC36.37■■■■□ 3.41
CUX2O14529 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC36.37■■■■□ 3.41
CUX2O14529 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC36.37■■■■□ 3.41
CUX2O14529 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC36.37■■■■□ 3.41
CUX2O14529 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC36.37■■■■□ 3.41
CUX2O14529 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC36.37■■■■□ 3.41
CUX2O14529 LINC00543-201ENST00000567234 1845 ntBASIC36.37■■■■□ 3.41
CUX2O14529 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC36.37■■■■□ 3.41
CUX2O14529 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC36.37■■■■□ 3.41
CUX2O14529 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC36.37■■■■□ 3.41
CUX2O14529 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC36.37■■■■□ 3.41
CUX2O14529 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC36.36■■■■□ 3.41
CUX2O14529 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC36.36■■■■□ 3.41
CUX2O14529 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC36.36■■■■□ 3.41
CUX2O14529 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC36.36■■■■□ 3.41
CUX2O14529 METTL23-204ENST00000586752 904 ntTSL 2 BASIC36.36■■■■□ 3.41
CUX2O14529 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC36.35■■■■□ 3.41
CUX2O14529 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC36.35■■■■□ 3.41
CUX2O14529 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC36.35■■■■□ 3.41
CUX2O14529 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC36.35■■■■□ 3.41
CUX2O14529 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC36.35■■■■□ 3.41
CUX2O14529 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC36.35■■■■□ 3.41
CUX2O14529 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC36.35■■■■□ 3.41
CUX2O14529 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC36.35■■■■□ 3.41
CUX2O14529 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC36.35■■■■□ 3.41
CUX2O14529 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC36.35■■■■□ 3.41
CUX2O14529 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC36.35■■■■□ 3.41
CUX2O14529 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC36.34■■■■□ 3.41
CUX2O14529 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC36.34■■■■□ 3.41
CUX2O14529 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC36.34■■■■□ 3.41
CUX2O14529 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC36.34■■■■□ 3.41
CUX2O14529 CD44-222ENST00000526025 1052 ntTSL 2 BASIC36.34■■■■□ 3.41
CUX2O14529 AC120498.10-201ENST00000621827 505 ntBASIC36.34■■■■□ 3.41
CUX2O14529 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC36.34■■■■□ 3.41
CUX2O14529 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC36.34■■■■□ 3.41
CUX2O14529 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC36.34■■■■□ 3.41
CUX2O14529 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC36.34■■■■□ 3.41
CUX2O14529 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC36.34■■■■□ 3.41
CUX2O14529 AC004812.2-201ENST00000611079 2094 ntBASIC36.34■■■■□ 3.41
CUX2O14529 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC36.33■■■■□ 3.41
CUX2O14529 AC239809.2-201ENST00000415381 517 ntBASIC36.33■■■■□ 3.41
CUX2O14529 DUX4L26-201ENST00000489078 1255 ntBASIC36.33■■■■□ 3.41
CUX2O14529 AC026471.5-201ENST00000615068 467 ntBASIC36.33■■■■□ 3.41
CUX2O14529 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC36.33■■■■□ 3.41
CUX2O14529 CREM-210ENST00000374721 2020 ntTSL 5 BASIC36.33■■■■□ 3.41
CUX2O14529 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC36.32■■■■□ 3.41
CUX2O14529 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC36.32■■■■□ 3.41
CUX2O14529 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC36.32■■■■□ 3.41
CUX2O14529 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC36.32■■■■□ 3.41
CUX2O14529 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC36.32■■■■□ 3.41
CUX2O14529 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC36.32■■■■□ 3.4
CUX2O14529 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC36.32■■■■□ 3.4
CUX2O14529 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC36.32■■■■□ 3.4
CUX2O14529 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC36.31■■■■□ 3.4
CUX2O14529 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC36.31■■■■□ 3.4
CUX2O14529 NMU-205ENST00000511469 756 ntTSL 3 BASIC36.31■■■■□ 3.4
CUX2O14529 AC087388.1-201ENST00000571370 1112 ntBASIC36.31■■■■□ 3.4
CUX2O14529 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC36.31■■■■□ 3.4
CUX2O14529 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC36.31■■■■□ 3.4
CUX2O14529 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC36.31■■■■□ 3.4
CUX2O14529 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC36.31■■■■□ 3.4
CUX2O14529 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC36.31■■■■□ 3.4
CUX2O14529 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC36.31■■■■□ 3.4
CUX2O14529 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC36.31■■■■□ 3.4
CUX2O14529 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC36.3■■■■□ 3.4
CUX2O14529 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC36.3■■■■□ 3.4
CUX2O14529 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC36.3■■■■□ 3.4
CUX2O14529 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC36.3■■■■□ 3.4
CUX2O14529 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC36.3■■■■□ 3.4
CUX2O14529 TERF1P1-201ENST00000311003 1181 ntBASIC36.3■■■■□ 3.4
CUX2O14529 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC36.3■■■■□ 3.4
CUX2O14529 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC36.3■■■■□ 3.4
CUX2O14529 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC36.3■■■■□ 3.4
CUX2O14529 AC100791.3-201ENST00000617619 330 ntBASIC36.3■■■■□ 3.4
CUX2O14529 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC36.29■■■■□ 3.4
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms