Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.52■□□□□ 0.72
HMGN4O00479 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
HMGN4O00479 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HMGN4O00479 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
HMGN4O00479 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
HMGN4O00479 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.52■□□□□ 0.71
HMGN4O00479 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
HMGN4O00479 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HMGN4O00479 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HMGN4O00479 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HMGN4O00479 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
HMGN4O00479 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC19.51■□□□□ 0.71
HMGN4O00479 NT5C3AP1-201ENST00000394500 1012 ntBASIC19.51■□□□□ 0.71
HMGN4O00479 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.51■□□□□ 0.71
HMGN4O00479 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HMGN4O00479 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HMGN4O00479 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC19.51■□□□□ 0.71
HMGN4O00479 EEF1DP3-203ENST00000566025 782 ntBASIC19.51■□□□□ 0.71
HMGN4O00479 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC19.51■□□□□ 0.71
HMGN4O00479 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC19.51■□□□□ 0.71
HMGN4O00479 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HMGN4O00479 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HMGN4O00479 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
HMGN4O00479 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
HMGN4O00479 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
HMGN4O00479 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.51■□□□□ 0.71
HMGN4O00479 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HMGN4O00479 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HMGN4O00479 PLK5-205ENST00000642079 1969 ntBASIC19.5■□□□□ 0.71
HMGN4O00479 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.5■□□□□ 0.71
HMGN4O00479 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HMGN4O00479 RHOF-204ENST00000537265 699 ntTSL 2 BASIC19.5■□□□□ 0.71
HMGN4O00479 AL358852.1-201ENST00000623174 1268 ntBASIC19.5■□□□□ 0.71
HMGN4O00479 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
HMGN4O00479 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HMGN4O00479 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
HMGN4O00479 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
HMGN4O00479 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.5■□□□□ 0.71
HMGN4O00479 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HMGN4O00479 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGN4O00479 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HMGN4O00479 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGN4O00479 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGN4O00479 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HMGN4O00479 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.49■□□□□ 0.71
HMGN4O00479 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGN4O00479 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HMGN4O00479 AC053503.5-201ENST00000601508 636 ntBASIC19.49■□□□□ 0.71
HMGN4O00479 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HMGN4O00479 CPT2-209ENST00000636935 803 ntTSL 5 BASIC19.49■□□□□ 0.71
HMGN4O00479 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGN4O00479 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.49■□□□□ 0.71
HMGN4O00479 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGN4O00479 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HMGN4O00479 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HMGN4O00479 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGN4O00479 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HMGN4O00479 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
HMGN4O00479 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGN4O00479 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HMGN4O00479 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.48■□□□□ 0.71
HMGN4O00479 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HMGN4O00479 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC19.48■□□□□ 0.71
HMGN4O00479 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
HMGN4O00479 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HMGN4O00479 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HMGN4O00479 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HMGN4O00479 HYI-206ENST00000372434 1025 ntTSL 5 BASIC19.48■□□□□ 0.71
HMGN4O00479 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
HMGN4O00479 MTURN-203ENST00000409688 843 ntTSL 2 BASIC19.48■□□□□ 0.71
HMGN4O00479 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC19.48■□□□□ 0.71
HMGN4O00479 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC19.48■□□□□ 0.71
HMGN4O00479 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HMGN4O00479 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC19.48■□□□□ 0.71
HMGN4O00479 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC19.48■□□□□ 0.71
HMGN4O00479 AC005837.3-201ENST00000612163 286 ntBASIC19.48■□□□□ 0.71
HMGN4O00479 MIR6084-201ENST00000622012 110 ntBASIC19.48■□□□□ 0.71
HMGN4O00479 AC006128.1-201ENST00000624704 1661 ntBASIC19.48■□□□□ 0.71
HMGN4O00479 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
HMGN4O00479 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
HMGN4O00479 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.48■□□□□ 0.71
HMGN4O00479 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HMGN4O00479 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
HMGN4O00479 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGN4O00479 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGN4O00479 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HMGN4O00479 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HMGN4O00479 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
HMGN4O00479 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGN4O00479 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGN4O00479 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.47■□□□□ 0.71
HMGN4O00479 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HMGN4O00479 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.47■□□□□ 0.71
HMGN4O00479 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGN4O00479 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGN4O00479 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.47■□□□□ 0.71
HMGN4O00479 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGN4O00479 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HMGN4O00479 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGN4O00479 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms