Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 pRNA.5-201ENST00000612139 90 ntBASIC19.67■□□□□ 0.74
TCRBV3S1A0A5B6 pRNA.11-201ENST00000618423 90 ntBASIC19.67■□□□□ 0.74
TCRBV3S1A0A5B6 pRNA.13-201ENST00000619112 90 ntBASIC19.67■□□□□ 0.74
TCRBV3S1A0A5B6 AP004607.7-201ENST00000527152 1677 ntBASIC19.67■□□□□ 0.74
TCRBV3S1A0A5B6 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TCRBV3S1A0A5B6 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TCRBV3S1A0A5B6 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
TCRBV3S1A0A5B6 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC19.67■□□□□ 0.74
TCRBV3S1A0A5B6 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TCRBV3S1A0A5B6 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TCRBV3S1A0A5B6 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
TCRBV3S1A0A5B6 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TCRBV3S1A0A5B6 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TCRBV3S1A0A5B6 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TCRBV3S1A0A5B6 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TCRBV3S1A0A5B6 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TCRBV3S1A0A5B6 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TCRBV3S1A0A5B6 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
TCRBV3S1A0A5B6 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
TCRBV3S1A0A5B6 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC19.66■□□□□ 0.74
TCRBV3S1A0A5B6 MTDHP2-201ENST00000601468 714 ntBASIC19.66■□□□□ 0.74
TCRBV3S1A0A5B6 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TCRBV3S1A0A5B6 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TCRBV3S1A0A5B6 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
TCRBV3S1A0A5B6 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC19.66■□□□□ 0.74
TCRBV3S1A0A5B6 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TCRBV3S1A0A5B6 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TCRBV3S1A0A5B6 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.65■□□□□ 0.74
TCRBV3S1A0A5B6 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC19.65■□□□□ 0.74
TCRBV3S1A0A5B6 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
TCRBV3S1A0A5B6 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
TCRBV3S1A0A5B6 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
TCRBV3S1A0A5B6 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TCRBV3S1A0A5B6 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TCRBV3S1A0A5B6 OR2I1P-207ENST00000453522 948 ntBASIC19.65■□□□□ 0.74
TCRBV3S1A0A5B6 EXOG-217ENST00000630638 197 ntTSL 5 BASIC19.65■□□□□ 0.74
TCRBV3S1A0A5B6 SMG8-203ENST00000578922 2178 ntBASIC19.65■□□□□ 0.74
TCRBV3S1A0A5B6 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TCRBV3S1A0A5B6 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TCRBV3S1A0A5B6 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
TCRBV3S1A0A5B6 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TCRBV3S1A0A5B6 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
TCRBV3S1A0A5B6 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
TCRBV3S1A0A5B6 AC087289.5-201ENST00000586076 3175 ntBASIC19.65■□□□□ 0.74
TCRBV3S1A0A5B6 AC099778.1-201ENST00000568593 1911 ntBASIC19.64■□□□□ 0.74
TCRBV3S1A0A5B6 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
TCRBV3S1A0A5B6 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.64■□□□□ 0.74
TCRBV3S1A0A5B6 AL020996.1-203ENST00000536896 2307 ntBASIC19.64■□□□□ 0.74
TCRBV3S1A0A5B6 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
TCRBV3S1A0A5B6 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TCRBV3S1A0A5B6 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
TCRBV3S1A0A5B6 AC006455.2-201ENST00000429931 906 ntBASIC19.64■□□□□ 0.73
TCRBV3S1A0A5B6 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC19.64■□□□□ 0.73
TCRBV3S1A0A5B6 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.64■□□□□ 0.73
TCRBV3S1A0A5B6 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.64■□□□□ 0.73
TCRBV3S1A0A5B6 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.64■□□□□ 0.73
TCRBV3S1A0A5B6 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TCRBV3S1A0A5B6 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.64■□□□□ 0.73
TCRBV3S1A0A5B6 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.63■□□□□ 0.73
TCRBV3S1A0A5B6 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TCRBV3S1A0A5B6 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TCRBV3S1A0A5B6 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TCRBV3S1A0A5B6 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.63■□□□□ 0.73
TCRBV3S1A0A5B6 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
TCRBV3S1A0A5B6 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.63■□□□□ 0.73
TCRBV3S1A0A5B6 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.63■□□□□ 0.73
TCRBV3S1A0A5B6 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC19.63■□□□□ 0.73
TCRBV3S1A0A5B6 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TCRBV3S1A0A5B6 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
TCRBV3S1A0A5B6 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TCRBV3S1A0A5B6 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC19.62■□□□□ 0.73
TCRBV3S1A0A5B6 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TCRBV3S1A0A5B6 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
TCRBV3S1A0A5B6 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TCRBV3S1A0A5B6 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.62■□□□□ 0.73
TCRBV3S1A0A5B6 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TCRBV3S1A0A5B6 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.62■□□□□ 0.73
TCRBV3S1A0A5B6 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TCRBV3S1A0A5B6 AL117332.1-201ENST00000622628 974 ntBASIC19.62■□□□□ 0.73
TCRBV3S1A0A5B6 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
TCRBV3S1A0A5B6 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TCRBV3S1A0A5B6 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC19.62■□□□□ 0.73
TCRBV3S1A0A5B6 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
TCRBV3S1A0A5B6 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
TCRBV3S1A0A5B6 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC19.61■□□□□ 0.73
TCRBV3S1A0A5B6 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.61■□□□□ 0.73
TCRBV3S1A0A5B6 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TCRBV3S1A0A5B6 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TCRBV3S1A0A5B6 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.61■□□□□ 0.73
TCRBV3S1A0A5B6 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
TCRBV3S1A0A5B6 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC19.61■□□□□ 0.73
TCRBV3S1A0A5B6 BRD4-212ENST00000630599 726 ntTSL 2 BASIC19.61■□□□□ 0.73
TCRBV3S1A0A5B6 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
TCRBV3S1A0A5B6 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
TCRBV3S1A0A5B6 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TCRBV3S1A0A5B6 AP006587.3-201ENST00000525742 1516 ntBASIC19.61■□□□□ 0.73
TCRBV3S1A0A5B6 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TCRBV3S1A0A5B6 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.6■□□□□ 0.73
TCRBV3S1A0A5B6 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
TCRBV3S1A0A5B6 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms