Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRAV1-1A0A0B4J248 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRAV1-1A0A0B4J248 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRAV1-1A0A0B4J248 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC16.41■□□□□ 0.22
TRAV1-1A0A0B4J248 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV1-1A0A0B4J248 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV1-1A0A0B4J248 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV1-1A0A0B4J248 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC16.4■□□□□ 0.22
TRAV1-1A0A0B4J248 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV1-1A0A0B4J248 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV1-1A0A0B4J248 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV1-1A0A0B4J248 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV1-1A0A0B4J248 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
TRAV1-1A0A0B4J248 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV1-1A0A0B4J248 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV1-1A0A0B4J248 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
TRAV1-1A0A0B4J248 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC16.4■□□□□ 0.22
TRAV1-1A0A0B4J248 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC16.4■□□□□ 0.22
TRAV1-1A0A0B4J248 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV1-1A0A0B4J248 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC16.4■□□□□ 0.22
TRAV1-1A0A0B4J248 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
TRAV1-1A0A0B4J248 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV1-1A0A0B4J248 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV1-1A0A0B4J248 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC16.4■□□□□ 0.22
TRAV1-1A0A0B4J248 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV1-1A0A0B4J248 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV1-1A0A0B4J248 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV1-1A0A0B4J248 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV1-1A0A0B4J248 BID-203ENST00000399765 1879 ntTSL 2 BASIC16.39■□□□□ 0.22
TRAV1-1A0A0B4J248 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC16.39■□□□□ 0.22
TRAV1-1A0A0B4J248 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRAV1-1A0A0B4J248 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
TRAV1-1A0A0B4J248 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRAV1-1A0A0B4J248 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC16.39■□□□□ 0.21
TRAV1-1A0A0B4J248 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC16.39■□□□□ 0.21
TRAV1-1A0A0B4J248 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC16.39■□□□□ 0.21
TRAV1-1A0A0B4J248 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
TRAV1-1A0A0B4J248 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC16.39■□□□□ 0.21
TRAV1-1A0A0B4J248 AL499627.2-201ENST00000606283 725 ntBASIC16.39■□□□□ 0.21
TRAV1-1A0A0B4J248 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC16.39■□□□□ 0.21
TRAV1-1A0A0B4J248 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC16.39■□□□□ 0.21
TRAV1-1A0A0B4J248 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRAV1-1A0A0B4J248 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC16.39■□□□□ 0.21
TRAV1-1A0A0B4J248 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRAV1-1A0A0B4J248 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRAV1-1A0A0B4J248 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRAV1-1A0A0B4J248 AC003102.1-202ENST00000563394 1796 ntBASIC16.38■□□□□ 0.21
TRAV1-1A0A0B4J248 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV1-1A0A0B4J248 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV1-1A0A0B4J248 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC16.38■□□□□ 0.21
TRAV1-1A0A0B4J248 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
TRAV1-1A0A0B4J248 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV1-1A0A0B4J248 NKILA-201ENST00000613231 537 ntTSL 4 BASIC16.38■□□□□ 0.21
TRAV1-1A0A0B4J248 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC16.38■□□□□ 0.21
TRAV1-1A0A0B4J248 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV1-1A0A0B4J248 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
TRAV1-1A0A0B4J248 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC16.38■□□□□ 0.21
TRAV1-1A0A0B4J248 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV1-1A0A0B4J248 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV1-1A0A0B4J248 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV1-1A0A0B4J248 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
TRAV1-1A0A0B4J248 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
TRAV1-1A0A0B4J248 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV1-1A0A0B4J248 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV1-1A0A0B4J248 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV1-1A0A0B4J248 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
TRAV1-1A0A0B4J248 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
TRAV1-1A0A0B4J248 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAV1-1A0A0B4J248 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAV1-1A0A0B4J248 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC16.37■□□□□ 0.21
TRAV1-1A0A0B4J248 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAV1-1A0A0B4J248 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
TRAV1-1A0A0B4J248 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC16.37■□□□□ 0.21
TRAV1-1A0A0B4J248 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAV1-1A0A0B4J248 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TRAV1-1A0A0B4J248 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC16.37■□□□□ 0.21
TRAV1-1A0A0B4J248 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TRAV1-1A0A0B4J248 MIR6722-201ENST00000617286 78 ntBASIC16.37■□□□□ 0.21
TRAV1-1A0A0B4J248 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC16.37■□□□□ 0.21
TRAV1-1A0A0B4J248 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAV1-1A0A0B4J248 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
TRAV1-1A0A0B4J248 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAV1-1A0A0B4J248 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC16.37■□□□□ 0.21
TRAV1-1A0A0B4J248 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
TRAV1-1A0A0B4J248 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV1-1A0A0B4J248 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV1-1A0A0B4J248 AP000974.1-201ENST00000623909 2387 ntBASIC16.36■□□□□ 0.21
TRAV1-1A0A0B4J248 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV1-1A0A0B4J248 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC16.36■□□□□ 0.21
TRAV1-1A0A0B4J248 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV1-1A0A0B4J248 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV1-1A0A0B4J248 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
TRAV1-1A0A0B4J248 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV1-1A0A0B4J248 EML3-217ENST00000531557 2509 ntTSL 5 BASIC16.36■□□□□ 0.21
TRAV1-1A0A0B4J248 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV1-1A0A0B4J248 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV1-1A0A0B4J248 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
TRAV1-1A0A0B4J248 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV1-1A0A0B4J248 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC16.36■□□□□ 0.21
TRAV1-1A0A0B4J248 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms